Query= MSMg01no529_b11.b1 MSMg01no529_b11.b1 CHROMAT_FILE:
MSMg01no529_b11.b1 PHD_FILE: MSMg01no529_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:54 2005
(698 letters)
>mm_chr5_47461144_47462240
Length = 1097
Score = 1077 bits (557), Expect = 0.0
Identities = 579/593 (97%), Gaps = 12/593 (2%)
Strand = Plus / Minus
Query: 7 ggaattcattatatattctttccctttgttggcagaattagtaaatgaatagccaaatat 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggaattcattatatattctttccctttgttggcagaattagtaaatgaatagccaaatat 522
Query: 67 taaacacatttttttatattatctgatgagttgtttattctctcactgtatacatttgaa 126
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 taaacaca-ttttttatattatctgatgagttgtttattctctcactgtatacatttgaa 463
Query: 127 ataaacctattctcacaatgtttggctttctttctaaatgcctttttggttatataacct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ataaacctattctcacaatgtttggctttctttctaaatgcctttttggttatataacct 403
Query: 187 ctctctgtcactctaaatagtctgaaaggtttcccaagagttttagggaccttagctaga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctctctgtcactctaaatagtctgaaaggtttcccaagagttttagggaccttagctaga 343
Query: 247 caaacccaggatttgtaaattctaagttgtatttagggattagacaatttataaagaaga 306
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 342 caaacccaggatttgtaaattctaagttgtatttagggattaaacaatttataaagaaga 283
Query: 307 attgaagggtttattaaagatgccttgataaagaattaaacaaaaaggtaaaagagaggt 366
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 282 attgaagggtttattaaagatgccttgatatagaattaaacaaaaaggtaaaagagaggt 223
Query: 367 atctgcaaaaagtaagacatatctaagtgcgggtttagacctcaagggagataagcaact 426
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 atctgcaaaaag-----------taagtgcgggtttagacctcaagggagataagcaact 174
Query: 427 cattagtttgaaataggcatatatactaattattggccttttcagtttctgtcttctcag 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 cattagtttgaaataggcatatatactaattattggccttttcagtttctgtcttctcag 114
Query: 487 ccagtaatttctgacttctcaatgagggattcctcttgatgggattattataggaatggt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ccagtaatttctgacttctcaatgagggattcctcttgatgggattattataggaatggt 54
Query: 547 gaaaatgtagctcactggtatacagaatatagaatatttttatcttacagatt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 gaaaatgtagctcactggtatacagaatatagaatatttttatcttacagatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1097
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1087
Effective search space: 747856
Effective search space used: 747856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no529_b11.g1 MSMg01no529_b11.g1 CHROMAT_FILE:
MSMg01no529_b11.g1 PHD_FILE: MSMg01no529_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:55 2005
(604 letters)
>mm_chr5_47318443_47319446
Length = 1004
Score = 1060 bits (548), Expect = 0.0
Identities = 590/604 (97%)
Strand = Plus / Plus
Query: 1 tcagaaatgtgtttcctagtgcttaatgtcttagtctagaataactcctctctgtaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaaatgtgtttcctagtgcttaatgtcttagtctagaataactcctctctgtaacct 260
Query: 61 catctgaaaatcttgaaggtctcgaagtaattcaaaaagcttaactgtcccctaaatcaa 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctgaaaatcttgaaggtctcaaagtaattcaaaaagcttaactgtcccctaaatcaa 320
Query: 121 aataaaatactatttttcaaggaaatgagaaatatcatggggagaacaatcaagatatta 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 aataaaatactatttttcaaggaaatgagaaatatcgtggggagaacaatcaagatatta 380
Query: 181 taattccagcacccaataagaatcgccaggcatgtaaagaaatgaggtaaagaaatctat 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 taattccagcacccaataagaatcgccaggcatgtaaagagatgaggtaaagaaatctat 440
Query: 241 agcaaagaactgaactaaatgatgggatgagagggcatgtacattgtgatgtctgctctg 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaagaactgaaataaatgatgggatgagagggcatgtacattgtgatgtctgctctg 500
Query: 301 taatgctgccggtgttcaccaggagaaatggaaatatggccatggtggagaggaagtatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatgctgccggtgttcaccaggagaaatggaaatatggccatggtggagaggaagtatg 560
Query: 361 actatgtactaatgacattccaggagaaatgatagggagaatgagaaaatattaagagaa 420
|||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 561 actatgtactaatgacattccaggagaaattataggaagaaagagaaaatattaagagaa 620
Query: 421 caagcacatactggagtggtgacaagcaagtccatgtactgaaatgacccaattagccta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagcacatactggagtggtgacaagcaagtccatgtactgaaatgacccaattagccta 680
Query: 481 aagacatatctatattatctattcaaaatgtagaagtcaaaggagggatcaagacttgtg 540
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagacatatctacataaactattcaaaatgtagaagtcaaaggagggatcaagacttgtg 740
Query: 541 agtctaactacagttattactatgatacaaacaatatgtgtaataagcagcaggaatgga 600
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 741 agtctaactagagttatcactatgatacaaacaatatgtgtaataagcaacagaaatgga 800
Query: 601 actg 604
||||
Sbjct: 801 actg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
