BAC Information

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BAC

Clone NameMSMg01-529J12
Chromosome5 (Build37)
Map Location 144,497,569 - 144,727,795
singlet/doubletdoublet
Overlap geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik
Upstream geneZfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42
Downstream geneAU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529J12.T7 (MSMg01no529_j12.b1)MSMg01-529J12.TJ (MSMg01no529_j12.g1)
ACCAG598437AG598438
length768756
length of high quality
(start - end)		617 (53 - 669)644 (82 - 725)
definitionCHROMAT_FILE: MSMg01no529_j12.b1 PHD_FILE: MSMg01no529_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:38 2005CHROMAT_FILE: MSMg01no529_j12.g1 PHD_FILE: MSMg01no529_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,727,380 - 144,727,795)(144,497,569 - 144,498,212)
sequence
NNNNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAGGAAAACCAGCTGCAATGACAAGAAGCACAGGGAGG
CCTTGTTTATTCCGACACGCTGGAGTGGATCAGGAAGTGATTGGTGATTT
CTGATTCATTTATTAGTCCTGTATAGGGGCTACACGAGTGTCGGGGCGGG
GGGGGGGCAGAGGCCGACTCCGAGTGTCTTCCTCTATTGTGCCCCACCTC
GGCTTTTGAGATGGTGTTTCTCACTCGCTTGGGGTTCACTGATTTAGCCG
CACTGGTTGACCCTCCTGTCCCCACCTCCCCAGCACTGGTTTTATGGGTG
AGCACCGCCACAGCTGACTTTCTTCACGGGTTCTAGGGAGCAAACTCAGG
TCCCCACGCTTGCAGGGCAAGCACTTTACCAGCTGAGCCACCTCCCCAGC
CCCTTTCTAGTGTAATCCCTGATTCCTGAAAGGGCAGCTGTGTACATCTG
TACATCCCCCTGGGTTTCTGTATATGTAAATCATGTATGTTAGAGACTCT
CGGCTTAAACTGGATCTGCACTGTTCCCAGCAACACTTTACAAACCTCAA
GCTCGAAGTTGCTGTCAGTTCCATCGTACACGAAAGGGTTGTCCTCCGCT
ATCACAGTCATGAATTTGGTCGCAGTTAGGTCTTTATTTATCATCCTAAA
GTCCTGTAGAAAGGTAACACCAACATAGATGCCTGTAATTATACATGGGC
ATATATTCTGATTGTAAT

NNNNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCCTACAACAGCGGAA
GGAGACAAGTGCTGTACGATTGTCCTCTAACCTCTAGCACACTAGAAATG
TAATGGAGCCTTTCTGAAAGGAAGACACAAGGATGATGTAACCCCTGAGC
TTAGAGGATAGAGTGATTCCCTAGGATGCAGAGAACCATGGGTCCCCTCT
CCATAAACAAATCAAGGGCAAATAGTAGCTGGGACTTGTAATGCTCAGAC
TCCGAAGACAGGAAGCACTACTTCAGGAGTTCAGTCTTATTGTGAGCAGC
GCAGTGAGCCCATGGCCATCCTACATGGTGACCTGAGAACATGAAACATT
AAAAGGCTCTGCCCCAGAATCTCAGAGGGGAGGGAGGAGGCGGGAGAGGA
GGGAGAGGTGCCAGGGGACAGCCTCTGGTGTTGTCCCTAATCTTTCATCT
TAAAAAATATATTTTTTTTTCTGTGTATGGGTATTTTGCTTGTATGTGTT
TAAGTGTACCGCGTGCATTTCTGGTGCCTGCAGAGGCCAGAAGAGAGCCC
CAGATCACCTAGAGCAGGGGATACAGGTTGTCGTAAAGTGCCTTGTGGGT
GATGAGGACTGAACCAAGGACCTCTGGAAGAGCCCTGAGTGTTCTTTACC
ACCTAACTGTCTCTCTAGCCCCACCTTTCACCATTTTGTAAGTGGTCTCT
TGCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_j12.b1 MSMg01no529_j12.b1 CHROMAT_FILE:
MSMg01no529_j12.b1 PHD_FILE: MSMg01no529_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:38 2005
         (617 letters)



>mm_chr5_144726779_144727795
          Length = 1017

 Score =  758 bits (392), Expect = 0.0
 Identities = 410/416 (98%)
 Strand = Plus / Minus

                                                                        
Query: 202  ttttgagatggtgtttctcactcgcttggggttcactgatttagccgcactggttgaccc 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ttttgagatggtgtttctcactcgcttggggttcactgatttagccgcactggttgaccc 958

                                                                        
Query: 262  tcctgtccccacctccccagcactggttttatgggtgagcaccgccacagctgactttct 321
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  tcctgtccccacctccccagcactggttttatgggtgagcaccgccacagctgactttct 898

                                                                        
Query: 322  tcacgggttctagggagcaaactcaggtccccacgcttgcagggcaagcactttaccagc 381
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 897  tcacgggttctagggagcaaactcaggtccccatgcttgcagggcaagcactttaccagc 838

                                                                        
Query: 382  tgagccacctccccagcccctttctagtgtaatccctgattcctgaaagggcagctgtgt 441
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 837  tgagccacctccccagcccctttctagtgtaatccccgattcctgaaagggcagctgtgt 778

                                                                        
Query: 442  acatctgtacatccccctgggtttctgtatatgtaaatcatgtatgttagagactctcgg 501
            |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||
Sbjct: 777  acatctgtacatccccctgggtttctgtatgtgtaaatcatgtacgttagagacgcgcgg 718

                                                                        
Query: 502  cttaaactggatctgcactgttcccagcaacactttacaaacctcaagctcgaagttgct 561
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  cttaaactggatctgcactgttcccagcaacactttacaaacctcaagctcgaagttgct 658

                                                                    
Query: 562  gtcagttccatcgtacacgaaagggttgtcctccgctatcacagtcatgaatttgg 617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657  gtcagttccatcgtacacgaaagggttgtcctccgctatcacagtcatgaatttgg 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no529_j12.g1 MSMg01no529_j12.g1 CHROMAT_FILE:
MSMg01no529_j12.g1 PHD_FILE: MSMg01no529_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:38 2005
         (644 letters)



>mm_chr5_144497369_144498412
          Length = 1044

 Score = 1222 bits (632), Expect = 0.0
 Identities = 641/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccctacaacagcggaaggagacaagtgctgtacgattgtcctctaacctctagcaca 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccctacaacagcagaaggagacaagtgctgtacgattgtcctctaacctctagcaca 260

                                                                       
Query: 61  ctagaaatgtaatggagcctttctgaaaggaagacacaaggatgatgtaacccctgagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagaaatgtaatggagcctttctgaaaggaagacacaaggatgatgtaacccctgagct 320

                                                                       
Query: 121 tagaggatagagtgattccctaggatgcagagaaccatgggtcccctctccataaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaggatagagtgattccctaggatgcagagaaccatgggtcccctctccataaacaaa 380

                                                                       
Query: 181 tcaagggcaaatagtagctgggacttgtaatgctcagactccgaagacaggaagcactac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaagggcaaatagtagctgggacttgtaatgctcagactccgaagacaggaagcactac 440

                                                                       
Query: 241 ttcaggagttcagtcttattgtgagcagcgcagtgagcccatggccatcctacatggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaggagttcagtcttattgtgagcagcgcagtgagcccatggccatcctacatggtga 500

                                                                       
Query: 301 cctgagaacatgaaacattaaaaggctctgccccagaatctcagaggggagggaggaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgagaacatgaaacattaaaaggctctgccccagaatctcagaggggagggaggaggc 560

                                                                       
Query: 361 gggagaggagggagaggtgccaggggacagcctctggtgttgtccctaatctttcatctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggagaggagggagaggtgccaggggacagcctctggtgttgtccctaatctttcatctt 620

                                                                       
Query: 421 aaaaaatatatttttttttctgtgtatgggtattttgcttgtatgtgtttaagtgtaccg 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaatatatatttttttctgtgtatgggtattttgcttgtatgtgtttaagtgtaccg 680

                                                                       
Query: 481 cgtgcatttctggtgcctgcagaggccagaagagagccccagatcacctagagcagggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgtgcatttctggtgcctgcagaggccagaagagagccccagatcacctagagcagggga 740

                                                                       
Query: 541 tacaggttgtcgtaaagtgccttgtgggtgatgaggactgaaccaaggacctctggaaga 600
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 tacaggttgtcgtaaagtgccttgtgggtgatggggactgaaccaaggacctctggaaga 800

                                                       
Query: 601 gccctgagtgttctttaccacctaactgtctctctagccccacc 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gccctgagtgttctttaccacctaactgtctctctagccccacc 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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