BAC Information

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BAC

Clone NameMSMg01-530E06
Chromosome5 (Build37)
Map Location 138,612,629 - 138,613,234
singlet/doubletsinglet
Overlap geneMcm7
Upstream geneMuc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6
Downstream geneAp4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530E06.T7 (MSMg01no530_e06.b1)MSMg01-530E06.TJ (MSMg01no530_e06.g1)
ACCAG598944AG598945
length763780
length of high quality
(start - end)		607 (73 - 679)538 (74 - 611)
definitionCHROMAT_FILE: MSMg01no530_e06.b1 PHD_FILE: MSMg01no530_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:31 2005CHROMAT_FILE: MSMg01no530_e06.g1 PHD_FILE: MSMg01no530_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGA
ATTCGCTAGCGCTTCCAGCAGCAGAGGCTGGCCCAGTAACCTAGTCCCTT
GGGTCACGTATTGAATGTATTGAACCACGTCACCCGGTCTCTACCGAGCG
CGCCCCTCCTTTGTGGACTCCATTGGGTTCTCTCCATAACACAAACACAT
CACCTTTTCCAAGGAGGATTGCTTCCTCCATCCTTGACGCCCACTGCTTA
TTGCAGGCGCAGTTCGCCTGTCCTCGGAGTCACAGATCCCGGCTCACTCC
CCCTCCCCCGCCCGACCCCAAGACTCCAGCACCCCTCAACAGGTGCAGGT
AGAAGTTTCCCTCCGAGGACGCCGCCCCCAGCCCTATAGATCTTCACCTT
TTTCGATCGCGTAGTCCTTAAGCGCCATCGCTGCCGGGGACGGTGTGGCA
GGACTTGAAGGGCTCAAAAATCTCTCTCTGGGGAAGCAGAAAACGAACGC
GCGGCGGGACGTAGACGGCCAACCGAAATTGGCGCGAAACGTCGTCACCC
ATGTGACCCGTGCGGCTGAGAACCCGCCAATCAGATAGGGGGTTCCCAAC
TGCTGCCAGCCCCTAACTTTAACCAATCAATGGACGAGTCTAGATTGAAT
GACAAGGGGCTTGAGGGCGGGCCGTTGATAGATTGCCAGATCCTGGCGGG
TTGGACACCCTGTTTCCCGCGGTTCGAATTAATGCTCGCGAGTGTGTGTG
TGGGAGGAGTGTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCTCTCTCCTCGGTAGTAAACAGGG
TCTGTAGAAGCTATTGTCAGTTGTCCCAGGTAGGCTTATGGGAGTACATC
AGAGACTCTATCAGCCCTGTGAGCCCTGCAGGGTTTTCTGAAAAAGGAGG
GTGATTAACTTTCCAGTTATAGAGATCAGAGGAAGAAGAGGGCCAATACT
GCAGAAGTTGTAGACTGTTCTGGTTGGTCGGAGGAACCCCAACAGCCCTG
AGGGGAAACACCACAGTTGAATCGGCTGGCCCCTTAGGGGTGGCTCCCTG
CCGGCTCCTCATTCCTGCTGAGGGACCTCCTCCCCTGGTCCTTGAGGCCA
GGGCCAGGAAGGGGGGGGGCGAGGGAGCTGGGGGTTGGGGAAGTTGAAGG
TAGGGTGGAGGCTGGGAATCGGGCCACTCAGGGGGTTCCTCTATCTCTGG
GTAGATCTTAGGGGTGAGTGTTGATAGAGTGCAACACTCGCCGTCTTCTT
TAGGCTGTGACTTCTGTGTCCCATTCACAGCACTCTCTTGGACAGCCAGG
ATCCTGGAGTCAGGACGAACAGCTGGACCCACTGGGGAGGGAATCTGGCC
AAATCCTCCCACACCGTGATGTACAGCTGGTGATCTGGGTGTGCTTCCTG
GCCTTCCTAAAACACATTGGCCCTGATGGTAGGTAAATCAAAAGTCCCCT
CGGGAGGCGCAGCCACTCCATATGCAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_e06.b1 MSMg01no530_e06.b1 CHROMAT_FILE:
MSMg01no530_e06.b1 PHD_FILE: MSMg01no530_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:31 2005
         (607 letters)



>mm_chr5_138612429_138613435
          Length = 1007

 Score = 1141 bits (590), Expect = 0.0
 Identities = 602/606 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggctggcccagtaacctagtcccttgggtcacgtattgaatgtattgaaccacgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 201 agaggctggcccagtaacctagtcccttgggtcacgtattgaatgcattgaaccaagtca 260

                                                                       
Query: 61  cccggtctctaccgagcgcgcccctcctttgtggactccattgggttctctccataacac 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cccggtctctaccgagcgcgcccctcctttgtggactccactgggttctctccataacac 320

                                                                       
Query: 121 aaacacatcaccttttccaaggaggattgcttcctccatccttgacgcccactgcttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacacatcaccttttccaaggaggattgcttcctccatccttgacgcccactgcttatt 380

                                                                       
Query: 181 gcaggcgcagttcgcctgtcctcggagtcacagatcccggctcactccccctcccccgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggcgcagttcgcctgtcctcggagtcacagatcccggctcactccccctcccccgcc 440

                                                                       
Query: 241 cgaccccaagactccagcacccctcaacaggtgcaggtagaagtttccctccgaggacgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgaccccaagactccagcacccctcaacaggtgcaggtagaagtttccctccgaggacgc 500

                                                                       
Query: 301 cgcccccagccctatagatcttcacctttttcgatcgcgtagtccttaagcgccatcgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgcccccagccctatagatcttcacctttttcgatcgcgtagtccttaagcgccatcgct 560

                                                                       
Query: 361 gccggggacggtgtggcaggacttgaagggctcaaaaatctctctctggggaagcagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccggggacggtgtggcaggacttgaagggctcaaaaatctctctctggggaagcagaaa 620

                                                                       
Query: 421 acgaacgcgcggcgggacgtagacggccaaccgaaattggcgcgaaacgtcgtcacccat 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgaacgcgcggcgggacgtagccggccaaccgaaattggcgcgaaacgtcgtcacccat 680

                                                                       
Query: 481 gtgacccgtgcggctgagaacccgccaatcagatagggggttcccaactgctgccagccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgacccgtgcggctgagaacccgccaatcagatagggggttcccaactgctgccagccc 740

                                                                       
Query: 541 ctaactttaaccaatcaatggacgagtctagattgaatgacaaggggcttgagggcgggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaactttaaccaatcaatggacgagtctagattgaatgacaaggggcttgagggcgggc 800

                 
Query: 601 cgttga 606
           ||||||
Sbjct: 801 cgttga 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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