BAC Information

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BAC

Clone NameMSMg01-530M11
Chromosome5 (Build37)
Map Location 78,251,517 - 78,433,846
singlet/doubletdoublet
Overlap genenone
Upstream geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530M11.T7 (MSMg01no530_m11.b1)MSMg01-530M11.TJ (MSMg01no530_m11.g1)
ACCAG599336AG599337
length756768
length of high quality
(start - end)		678 (79 - 756)687 (78 - 764)
definitionCHROMAT_FILE: MSMg01no530_m11.b1 PHD_FILE: MSMg01no530_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:13 2005CHROMAT_FILE: MSMg01no530_m11.g1 PHD_FILE: MSMg01no530_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,433,174 - 78,433,846)(78,251,517 - 78,252,203)
sequence
NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATGCGC
GGAATTCTCATTCACTCCCTATTCCCACCAACGACAAGATGTTAAATATT
ACATCTGAAAATAGGTCATAGGTTATCTCCCTCCTACCACACTATGGAGG
CATGCTCTCCCATGCTTGAAGAACTGTGGGCACCTGCAGTGGGCTGATCA
TTAAATCCCTGTTCCCATCAGAGTAAGAAATCACTTCTTCCCCATAAACG
CAAAACCTAATCTTTTATATAACTGTAGTTGTTTTATATCCATTTTAATT
TCTGTTATGTGATAAATTATCTTCTCTTTTCTAGTGTCCCCATGGGTTAA
AATGTGAGATAAATTTTAATTGAATCCAACAACTTGTAACAGGCAGGACA
CCTTTTTCTGATGCTCATTGTGGATATGGTGTCAGACGCTGCCATTCTGG
ATTGAAACTACTCCTTTAATTAATGCTTTCTTTCTCAAAACTGGGAGATA
CTGTTATTTCATTTCACACTTGTATTTCCAGATTGTTGGTGCCTTGGAAA
GGTGAATGAGAGAATCGGATATAATGAAGAAGACAGCATTACTGTTTAAT
TTAATTCAGAAAGAANAAATAGAAAAACAGGAATATTTACTACTCTGAGC
AATTTTTAGACAGTACCACCTTCAAATTCCATAAGATTCAGATATAAATA
ATTATGGTTCTGTTATGAGTTTTTACTCTGTGCATCTTGCTGAAAGCATT
TTGGCN

CCGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTGTATGCAACAAAGAAAGAC
ATAGTATAAATAAGGTGTTGTGCTTTCATTTTAGGGAATAACTAGAGAAA
GATGTTGAAAATGTTATATTAAGGCAGCGACAAAAGACTGAGAAAGATGA
GAAAAACTATAACTAAAGTCAACTTGAAGTGGTGTCAAAGACTCCCACTG
TGTGTGGAATGTAGTTTCCCAGTGATTTAAAGTGTAGCTGCCTGCAAAAC
CTCCTCATTTGTACAGATGAGCATTTGAAATTTCTCTTAACAAAATCAAA
ACCTGCAGCAGGGCATGGTGTCACAAGTCTGCAGTCTCAGCACTTTGGGA
GACAGAAATAGGAATATTATGAGGTGAGTTTCAAAAATAAAAACAAATAA
CAGAATGTAGAGCTCTGTTTTCATATCACGATTTTAGTTGAATATGGTTT
TGACATGTTCAATTACTGAGGTTCAGTGTTCTGTGTTCACACTTCTCTGA
CATCCCTCTCTAGGATATTAGCCCATTTAGCAATGAGCCTGTGATCCTCC
CGGGTGGTGAGGCCGAAGTCTGGGGTCATACCCAACAGTCGTGTATAGAT
TTTAAAAAAATCCACTTGTTTAATTGGGAGATTAATATTGAACAGTTAGC
ATGGAACAATTTGCATTACTTCATGTTGAGAATTCACCGAGCTGTTGAAT
GTAGAAAGTCAACAGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_m11.b1 MSMg01no530_m11.b1 CHROMAT_FILE:
MSMg01no530_m11.b1 PHD_FILE: MSMg01no530_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:13 2005
         (678 letters)



>mm_chr5_78432970_78434047
          Length = 1078

 Score = 1203 bits (622), Expect = 0.0
 Identities = 660/673 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gacaagatgttaaatattacatctgaaaataggtcataggttatctccctcctaccacac 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct: 877 gacaagatgttaaatattacatctgaaaataggccataggttatctccctcttaccacgc 818

                                                                       
Query: 65  tatggaggcatgctctcccatgcttgaagaactgtgggcacctgcagtgggctgatcatt 124
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| 
Sbjct: 817 tatggaggcatgctctcccatggttgaagaactgtgggcacctgcagtgggctgctcatg 758

                                                                       
Query: 125 aaatccctgttcccatcagagtaagaaatcacttcttccccataaacgcaaaacctaatc 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 757 aaatccctgttcccatcagagtaagaaatcacttcttcctcataaacgcaaaacctaatc 698

                                                                       
Query: 185 ttttatataactgtagttgttttatatccattttaatttctgttatgtgataaattatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttttatataactgtagttgttttatatccattttaatttctgttatgtgataaattatct 638

                                                                       
Query: 245 tctcttttctagtgtccccatgggttaaaatgtgagataaattttaattgaatccaacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tctcttttctagtgtccccatgggttaaaatgtgagataaattttaattgaatccaacaa 578

                                                                       
Query: 305 cttgtaacaggcaggacacctttttctgatgctcattgtggatatggtgtcagacgctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 577 cttgtaacaggcaggacacctttttctgatgctcattgtggatatggtgtcagacactgc 518

                                                                       
Query: 365 cattctggattgaaactactcctttaattaatgctttctttctcaaaactgggagatact 424
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 517 cattctggattgaaactgctcctttaattaatgctttctttctcaaaactgggagataat 458

                                                                       
Query: 425 gttatttcatttcacacttgtatttccagattgttggtgccttggaaaggtgaatgagag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gttatttcatttcacacttgtatttccagattgttggtgccttggaaaggtgaatgagag 398

                                                                       
Query: 485 aatcggatataatgaagaagacagcattactgtttaatttaattcagaaagaanaaatag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 397 aatcggatataatgaagaagacagcattactgtttaatttaattcagaaagaaaaaatag 338

                                                                       
Query: 545 aaaaacaggaatatttactactctgagcaatttttagacagtaccaccttcaaattccat 604
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaaaaaaggaatatttactactctgagcaatttttagacagtaccaccttcaaattccat 278

                                                                       
Query: 605 aagattcagatataaataattatggttctgttatgagtttttactctgtgcatcttgctg 664
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aagatccagatataaataattatggttctgttatgagtttttactctgtgcatcttgctg 218

                        
Query: 665 aaagcattttggc 677
           |||||||||||||
Sbjct: 217 aaagcattttggc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no530_m11.g1 MSMg01no530_m11.g1 CHROMAT_FILE:
MSMg01no530_m11.g1 PHD_FILE: MSMg01no530_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:13 2005
         (687 letters)



>mm_chr5_78251317_78252403
          Length = 1087

 Score = 1297 bits (671), Expect = 0.0
 Identities = 683/687 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgtatgcaacaaagaaagacatagtataaataaggtgttgtgctttcattttaggga 60
           |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ctgtatatgcaacaaagaaagacatagtataaagaaggtgttgtgctttcattttaggga 260

                                                                       
Query: 61  ataactagagaaagatgttgaaaatgttatattaaggcagcgacaaaagactgagaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataactagagaaagatgttgaaaatgttatattaaggcagcgacaaaagactgagaaaga 320

                                                                       
Query: 121 tgagaaaaactataactaaagtcaacttgaagtggtgtcaaagactcccactgtgtgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagaaaaactataactaaagtcaacttgaagtggtgtcaaagactcccactgtgtgtgg 380

                                                                       
Query: 181 aatgtagtttcccagtgatttaaagtgtagctgcctgcaaaacctcctcatttgtacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgtagtttcccagtgatttaaagtgtagctgcctgcaaaacctcctcatttgtacaga 440

                                                                       
Query: 241 tgagcatttgaaatttctcttaacaaaatcaaaacctgcagcagggcatggtgtcacaag 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagtatttgaaatttctcttaacaaaatcaaaacctgcagcagggcatggtgtcacaag 500

                                                                       
Query: 301 tctgcagtctcagcactttgggagacagaaataggaatattatgaggtgagtttcaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgcagtctcagcactttgggagacagaaataggaatattatgaggtgagtttcaaaaa 560

                                                                       
Query: 361 taaaaacaaataacagaatgtagagctctgttttcatatcacgattttagttgaatatgg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 taaaaacaaataacagaatgtagagctctgttttcatatcacgattttagttaaatatgg 620

                                                                       
Query: 421 ttttgacatgttcaattactgaggttcagtgttctgtgttcacacttctctgacatccct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttgacatgttcaattactgaggttcagtgttctgtgttcacacttctctgacatccct 680

                                                                       
Query: 481 ctctaggatattagcccatttagcaatgagcctgtgatcctcccgggtggtgaggccgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctaggatattagcccatttagcaatgagcctgtgatcctcccgggtggtgaggccgaa 740

                                                                       
Query: 541 gtctggggtcatacccaacagtcgtgtatagattttaaaaaaatccacttgtttaattgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtctggggtcatacccaacagtcgtgtatagattttaaaaaaatccacttgtttaattgg 800

                                                                       
Query: 601 gagattaatattgaacagttagcatggaacaatttgcattacttcatgttgagaattcac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagattaatattgaacagttagcatggaacaatttgcattacttcatgttgagaattcac 860

                                      
Query: 661 cgagctgttgaatgtagaaagtcaaca 687
           |||||||||||||||||||||||||||
Sbjct: 861 cgagctgttgaatgtagaaagtcaaca 887


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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