Query= MSMg01no531_a14.b1 MSMg01no531_a14.b1 CHROMAT_FILE:
MSMg01no531_a14.b1 PHD_FILE: MSMg01no531_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:33 2005
(574 letters)
>mm_chr5_132360613_132361586
Length = 974
Score = 586 bits (303), Expect = e-171
Identities = 458/573 (79%), Gaps = 104/573 (18%)
Strand = Plus / Plus
Query: 6 ggaattctctgacattaggaacaactaatgggcctgtgaatggtggcattaactcatact 65
||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 302 ggaattctctgacattaggaacaactaatgggcct----------gcattaactcataat 351
Query: 66 tccaggactggcagggaggaagcaaaaaaaaaaaaaaaaagaaaaatccattaaaataat 125
||||| |||||||||||||||||||||| ||||||||||||| |||
Sbjct: 352 tccagaactggcagggaggaagcaaaaa-------------aaaaatccattaa---aat 395
Query: 126 aaacaggatgaactggggagatagctcactaggtaaagaaacgctttgcaccttgtt-ac 184
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 396 aaacaggttgaactggggagatagctcactgggtaaagaaacgctttgcaccttgttaac 455
Query: 185 c---tgagtttgatccttggcacttatggtagaaagagaactgacttttggaagatattc 241
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 456 cacttgagtttggtccttggcactcatggtagaaagagaactgacttttggaagatattc 515
Query: 242 tgtaatctccatacaagtgtcaaggcacacatgcacacacacacatacatacacacacac 301
||||||||||||||||||| |||||||||||||
Sbjct: 516 tgtaatctccatacaagtgccaaggcacacatg--------------------------- 548
Query: 302 acatacatacacacacacacacacacacacgcatacacacacacacacacacacacacgc 361
|||||||||||||||||| |
Sbjct: 549 ---------------------------------------cacacacacacacacaca-g- 567
Query: 362 atacactgtaatgatgatgataaactagtaatagacacaacaaaagtggtaagtgtgaaa 421
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 568 ----a--gtaatgatgatgataaactcgtaatagacacaacaaaagtggtaagtgtgaaa 621
Query: 422 atttgtaaaaacttggtactttagcctagctagaagtagccatcaatatcagatgtaaag 481
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 622 atttgtaaaaacttggtactttagcctagctagaagcagccatcaatatcagatgtaaag 681
Query: 482 tgtgaggatatctgatttcttcaggcatacaaccatggacttgggctgatagaaaggaaa 541
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 682 tgtgaggatatctgatttcttcaggcatacaaccatgaacctgggctgatagaaaggaaa 741
Query: 542 cgtgcaagaatggctgtgtttgtgcacaggcag 574
|||||||||||||||||||||||||||||||||
Sbjct: 742 cgtgcaagaatggctgtgtttgtgcacaggcag 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_a14.g1 MSMg01no531_a14.g1 CHROMAT_FILE:
MSMg01no531_a14.g1 PHD_FILE: MSMg01no531_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:33 2005
(675 letters)
>mm_chr5_132527718_132528792
Length = 1075
Score = 1191 bits (616), Expect = 0.0
Identities = 656/676 (97%), Gaps = 12/676 (1%)
Strand = Plus / Minus
Query: 1 acttaagtgtgtttgccgtcagggccttgggaatgcaagcaagctgattccctgccaccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 904 acttaagtgtgtttgccgtcagggccttgggaatgcaagcaagctgattccctgccgccc 845
Query: 61 tccttgggttctgccctcagcccagatcaacatttagtcagataattgacaccggagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tccttgggttctgccctcagcccagatcaacatttagtcagataattgacaccggagcct 785
Query: 121 ttgaagtctgttgtgggccgtgttataaaatcattcttctctcatgaagaaacatggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ttgaagtctgttgtgggccgtgttataaaatcattcttctctcatgaagaaacatggaga 725
Query: 181 ggggactctttgcaatgtccaggttgtatattagaaata-tttttttattttaattttga 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 724 ggggactctttgcaatgtccaggttgtatattagaaatattttttttattttaattttga 665
Query: 240 attacacttgcgtatttgtgagtttgtatgggtgcacatggggttagagtacagtttgca 299
||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 664 attacacttgcatatttgtgagtttgtgtgggtgcacgtggggttagagtacagtttgca 605
Query: 300 aggataggtaggctctttttctaccgtgtagattctgggagttggtcagccactacccca 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggataggtaggctctctttctaccgtgtagattctgggagttggtcagccactacccca 545
Query: 360 gagttactaaaatacaaaggggatggtaaggcactgcagaatcatgacttgtgtgtttta 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gagttactaaaatacaaaggtgatggtaaggcactgcagaatcatgacttgtgtgtttta 485
Query: 420 tgtgcaccactaactgggtactgagtattaaaccagttagcaatcagttagcaatcagca 479
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 484 tgtgcaccactaactgggtactgagtattaaac-----------cagttagcaatcagca 436
Query: 480 atagaatcctgagtttggatcttaggttttggcctaactccgagttcatcgttccctgat 539
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 435 atagaatcctgagtttggatcctaggttttggcctaactctgagttcatcgttccctgat 376
Query: 540 tttcatttctgattggaaatggttctgcctttccgttatgagaattagttaaataataca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tttcatttctgattggaaatggttctgcctttccgttatgagaattagttaaataataca 316
Query: 600 tcttgtcttgtttttgagacagggcctcgtgtatgccaggctgcccttgaactcactgag 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcttgtcttgtttttgagacagggcctcgtgtatgccaggctgcccttgaactcactgag 256
Query: 660 tagcaaggatgacctg 675
||||||||||||||||
Sbjct: 255 tagcaaggatgacctg 240
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
