Query= MSMg01no532_a10.b1 MSMg01no532_a10.b1 CHROMAT_FILE:
MSMg01no532_a10.b1 PHD_FILE: MSMg01no532_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:50 2005
(615 letters)
>mm_chr5_21735860_21736874
Length = 1015
Score = 1023 bits (529), Expect = 0.0
Identities = 592/619 (95%), Gaps = 12/619 (1%)
Strand = Plus / Plus
Query: 5 gaattcagttcttcatttgctctaatcatattctgagtgcagaagaggtagctgcaggta 64
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 gaattcagttcttcagttgctctaatcatattccgagtgcagaagaggtagctgcaggta 260
Query: 65 ggagtgggtttggcagcggagagcagatcacatccttccaatgtagaaatccctattagg 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtgggtttggcagcggagagcagaccacatccttccaatgtagaaatccctattagg 320
Query: 125 tggccgatgcacagagcaaaactcagcttctctggattgacctgtcaccgttttttaact 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccgatgcacagagcaaaactcagcttctctggattgacctgtcaccgttttttaacc 380
Query: 185 tcagcttcagcactgtcggcctgtaagtccttcccatacccttccacactttacacctga 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagcttcagcactgtcagcctgtaagtccttcccatacccttccacactttacacctga 440
Query: 245 aatatcaagtgggcccctctgctgtgttaacacaaatgatgccctctaactaaaatacag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatcaagtgggcccctctgctgtgttaacacaaatgatgccctctaactaaaatacag 500
Query: 305 tcttcaactgttctctgtcacctcacaaattctacattgggattcactatcatcttttca 364
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 tcttcaactgtcctctgtcacctcacaaatcctacattgggattcactatcatcttttca 560
Query: 365 cctccaagacaacctgatgttcctctcctggcttctggtg-agccttttacttaatccca 423
|||||||||||||| |||||||| ||||||| ||||| || | ||||||||||||||
Sbjct: 561 cctccaagacaacccgatgttcccctcctggtttctgctgga----tttacttaatccca 616
Query: 424 gaatactagaagtcatctggaaagttctgcctcttatcctccactgtatcctccatttcg 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 617 gaatactagaagtcatctggaaagttctgcctcttatcctccactgtatcctccatctcg 676
Query: 484 tagtaaatc-------cttctggcacctgccacggtatgcatagtcaatatttaacttac 536
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 677 taggaaatcagatatccttctggcacctgccacggtatgcatagtcaatatgtaacttac 736
Query: 537 ctagtcatgctttcaacggtttctcatttcttgagattaaaaactaatacatattttcat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 737 ctagtcatgctttcaacggtttctcatttcttgagattaaaaactaatacatatttttat 796
Query: 597 taatttattttccaactta 615
|||||||||||||||||||
Sbjct: 797 taatttattttccaactta 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_a10.g1 MSMg01no532_a10.g1 CHROMAT_FILE:
MSMg01no532_a10.g1 PHD_FILE: MSMg01no532_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:50 2005
(561 letters)
>mm_chr5_21922598_21923558
Length = 961
Score = 864 bits (447), Expect = 0.0
Identities = 477/487 (97%)
Strand = Plus / Minus
Query: 1 acccattttttatgcttgaaaacataaaacataacatctattttaagctcttaaacttgg 60
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 508 acccattttttatgcttgaaaacataaaacatcatatctattttaagctcttaaacttgg 449
Query: 61 ttaaatattctccaaaacataagcagtttctggggatagtgagctgctgctccataggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 448 ttaaatattctccaaaacataagcagtttctggggatagtgagctgctgctccgtaggcc 389
Query: 121 cagcatccactgccaggcctgacctcagtttaagccctccatggaaggagagaacccact 180
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 388 cagcatccactgccaggcctgacctcagtttgagccttccatggaaggagagaacccact 329
Query: 181 gagcgtcctctggtctcatgtacctgcacacacatgtacacaaaatcaataaagtggaaa 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gagcgtcctctggtctcatgtgcctgcacacacatgtacacaaaatcaataaagtggaaa 269
Query: 241 tggaggtgattgatttcatcgataaatgcatgaaattctcaaaaataaagaagacttaat 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggaggtgatagatttcatcgataaatgcatgaaattctcaaaaataaagaagacttaat 209
Query: 301 gaaaaagagggattaaaaagacgtctgtctaaacacttaggagcacttgccactcttgca 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaaaaagagggattaaagagacgtctgtctaaacacttaggagcacttgccactcttgca 149
Query: 361 aagggctcagggcccaatacccacaaggcagttcaaaaccacctgtaactccatttccag 420
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 148 aagggctcagggcccaacacccacaaggcagttcacaaccacctgtaactccatttccag 89
Query: 421 gaagtctgacaccctcttctggcatccatgtgcaacatacatacgtacacacacacacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gaagtctgacaccctcttctggcatccatgtgcaacatacatacgtacacacacacacac 29
Query: 481 acacaca 487
|||||||
Sbjct: 28 acacaca 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
