BAC Information

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BAC

Clone NameMSMg01-532H24
Chromosome5 (Build37)
Map Location 68,286,000 - 68,423,054
singlet/doubletdoublet
Overlap geneEG330097, EG666977
Upstream gene3732412D22Rik, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458
Downstream geneAY616753, LOC666996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532H24.T7 (MSMg01no532_h24.b1)MSMg01-532H24.TJ (MSMg01no532_h24.g1)
ACCAG600644AG600645
length735746
length of high quality
(start - end)		625 (51 - 675)560 (85 - 644)
definitionCHROMAT_FILE: MSMg01no532_h24.b1 PHD_FILE: MSMg01no532_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:26 2005CHROMAT_FILE: MSMg01no532_h24.g1 PHD_FILE: MSMg01no532_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,286,000 - 68,286,617)(68,422,495 - 68,423,054)
sequence
NNNGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGG
ATCCGCGGAATTCTAAGGTATTTTCGATTTAGCAATTACAGAAAGCAGTT
AGGTCTATCAGAAAGAAGGAAGAGGCTGGACTTACTAAAACATCATGTTT
TGGAAGATTCACCTGCAAGTGTGTACTTCTGAGGAAGAGGTTTGCCTAGG
TGGTCCTAGAATCTGTTCAGAGAGAACCTGTTGCAGACTGGATACTTGCC
CCTTGCCCCTGGTTTCTATGTTAAAAGCTGATATCTAATATGTAGATAAT
TAGATATGCCGTCTTTGAGAGTTATGCTTTGGGGACTCTTGGCCCAGTGT
CTTTGTAAAATAGACTAGAGCAAGCTCCCTCATTCTTTGCTGTGTGTCAT
GAGAGATTACTGTCCATGAGCCAGATGTGTTTCCTAACCAGACATTAAAT
CCACTAGAGTCTTGATCTTAGAGGTCACAGTTTTCAGACCGTTTCTGTTG
TTTAGGCCGCATCACCTGTGGCAGTTCATTACAGTTTGCAGAGGGGAATG
AGGCCTGATGAGGGACCACTGGCCTGGCTGCTTCCTGAATCAGGTTCTTT
TTTCAAGGGCTAAACAGGCCTGTCAGGTGGATTCAAGCTGCAGCTACNAG
AACATACTGCAGCTCCATGGTGAAGAGGAGGAATTATCAGTTACAAACTG
GGGCATCAGTACTGGGATATGAATAGCCAGCTTAA

GGTATGATGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGATGGTAGCCCT
CCTGTGACAGCGAAAGAAAAGAAGATGCCTAAGGATGTGCAGTGTGCCTT
GGCTATCAATAATTAATACACATGTGTGCTATGGTTACCATTAAACTAAA
ACCTGAAAAATGACCCCAGTCTTTAAATATTAAACGTCCATGGTGGACTC
TGACAGAACAAGTGCAAGAAAGTGGCCTGAGATGAGACAGAAAGTAGGTA
CGTGACAAGGACAAAGCAGGCTTGAATGTCAATGCTGATGATGTGTGTGT
CAAAACGATCTTAGCAGAAATAACTCTATAGTATGCTCTCTAAAATGGGG
GTCAGAAACAAAATCTAGAATCAAATGTGTAGGATACAGGTGCCCCAATC
ATCTCTAACCATTTGTTTCTTCACCTACTCTCTCCTGATGATCTTTCAAA
GGGCAATGATGTGCTGCATGCCTGCATACAACTAAGCAGTTTTAATTCTA
GTTAAGGAGCTGATTTGACTGCATAAGGTGAATTTTCAAGACATCTTCAT
TCCCTGGTCCTTTGCTAAAGGCAAGCTTTGAACACACCGTGAAGGAGAGA
CCTTCAGGCTGATTGTGTTCCCACTTCTGCGAATAGGGAGTGCTCCCTTT
GATACAGGGAGGGGTTTGGAAAGGAGATGTGGAGCAGCAAAGGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_h24.b1 MSMg01no532_h24.b1 CHROMAT_FILE:
MSMg01no532_h24.b1 PHD_FILE: MSMg01no532_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:26 2005
         (625 letters)



>mm_chr5_68285793_68286817
          Length = 1025

 Score = 1143 bits (591), Expect = 0.0
 Identities = 611/618 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctaaggtattttcgatttagcaattacagaaagcagttaggtctatcagaaagaa 67
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctaaggtattttagatttagcaattacagaaagcagttaggtctatcagaaagaa 267

                                                                       
Query: 68  ggaagaggctggacttactaaaacatcatgttttggaagattcacctgcaagtgtgtact 127
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 268 ggaagaggctggacttactaaaacgtcatgttttggaagattcacctgcaagtgtgtact 327

                                                                       
Query: 128 tctgaggaagaggtttgcctaggtggtcctagaatctgttcagagagaacctgttgcaga 187
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 328 tctgaggaagaggtttgcctaggtggtcctagaatctgttcagagagaacctgttgaaga 387

                                                                       
Query: 188 ctggatacttgccccttgcccctggtttctatgttaaaagctgatatctaatatgtagat 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctggatacttgccccttgcccctggtttctatgttaaaagctgatatctaatatgtagat 447

                                                                       
Query: 248 aattagatatgccgtctttgagagttatgctttggggactcttggcccagtgtctttgta 307
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 448 aattagatatgccgtctttgagagttattctttggggactcttggcccagtgtctttgta 507

                                                                       
Query: 308 aaatagactagagcaagctccctcattctttgctgtgtgtcatgagagattactgtccat 367
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 508 aaatagactagagcaagctccctcattctttgctgtgtgtgatgagagattactgtccat 567

                                                                       
Query: 368 gagccagatgtgtttcctaaccagacattaaatccactagagtcttgatcttagaggtca 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gagccagatgtgtttcctaaccagacattaaatccactagagtcttgatcttagaggtca 627

                                                                       
Query: 428 cagttttcagaccgtttctgttgtttaggccgcatcacctgtggcagttcattacagttt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cagttttcagaccgtttctgttgtttaggccgcatcacctgtggcagttcattacagttt 687

                                                                       
Query: 488 gcagaggggaatgaggcctgatgagggaccactggcctggctgcttcctgaatcaggttc 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 688 gcagaggggaatgaggcctgatgagggaccactggcctggctgcttcctgaatcaggctc 747

                                                                       
Query: 548 ttttttcaagggctaaacaggcctgtcaggtggattcaagctgcagctacnagaacatac 607
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 748 ttttttcaagggctaaacaggcctgtcaggtggattcaagctgcagctacaagaacatac 807

                             
Query: 608 tgcagctccatggtgaag 625
           ||||||||||||||||||
Sbjct: 808 tgcagctccatggtgaag 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_h24.g1 MSMg01no532_h24.g1 CHROMAT_FILE:
MSMg01no532_h24.g1 PHD_FILE: MSMg01no532_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:26 2005
         (560 letters)



>mm_chr5_68422295_68423254
          Length = 960

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagatggtagccctcctgtgacagcgaaagaaaagaagatgcctaaggatgtgcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cagagatggtagccctcctgtgacagcgaaagaaaagaagatgcctaaggatgtgcagtg 701

                                                                       
Query: 61  tgccttggctatcaataattaatacacatgtgtgctatggttaccattaaactaaaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgccttggctatcaataattaatacacatgtgtgctatggttaccattaaactaaaacct 641

                                                                       
Query: 121 gaaaaatgaccccagtctttaaatattaaacgtccatggtggactctgacagaacaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaaaaatgaccccagtctttaaatattaaacgtccatggtggactctgacagaacaagtg 581

                                                                       
Query: 181 caagaaagtggcctgagatgagacagaaagtaggtacgtgacaaggacaaagcaggcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 caagaaagtggcctgagatgagacagaaagtaggtacgtgacaaggacaaagcaggcttg 521

                                                                       
Query: 241 aatgtcaatgctgatgatgtgtgtgtcaaaacgatcttagcagaaataactctatagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aatgtcaatgctgatgatgtgtgtgtcaaaacgatcttagcagaaataactctatagtat 461

                                                                       
Query: 301 gctctctaaaatgggggtcagaaacaaaatctagaatcaaatgtgtaggatacaggtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gctctctaaaatgggggtcagaaacaaaatctagaatcaaatgtgtaggatacaggtgcc 401

                                                                       
Query: 361 ccaatcatctctaaccatttgtttcttcacctactctctcctgatgatctttcaaagggc 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 400 ccaatcatctctaaccatttgtttcttcacctactctctcctgataatctttcaaagggc 341

                                                                       
Query: 421 aatgatgtgctgcatgcctgcatacaactaagcagttttaattctagttaaggagctgat 480
           | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agtgatgtgctgcacgcctgcatacaactaagcagttttaattctagttaaggagctgat 281

                                                                       
Query: 481 ttgactgcataaggtgaattttcaagacatcttcattccctggtcctttgctaaaggcaa 540
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 280 ttgactgcataaggtgaattttcaagacatcttcattccctggtccttcgctaaaggcaa 221

                               
Query: 541 gctttgaacacaccgtgaag 560
           ||||||||||||||||||||
Sbjct: 220 gctttgaacacaccgtgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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