BAC Information

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BAC

Clone NameMSMg01-532I10
Chromosome5 (Build37)
Map Location 138,411,078 - 138,595,715
singlet/doubletdoublet
Overlap geneAzgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113
Upstream geneFis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1
Downstream geneCops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532I10.T7 (MSMg01no532_i10.b1)MSMg01-532I10.TJ (MSMg01no532_i10.g1)
ACCAG600664AG600665
length750756
length of high quality
(start - end)		569 (50 - 618)300 (84 - 383)
definitionCHROMAT_FILE: MSMg01no532_i10.b1 PHD_FILE: MSMg01no532_i10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:28 2005CHROMAT_FILE: MSMg01no532_i10.g1 PHD_FILE: MSMg01no532_i10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,411,078 - 138,411,620)(138,595,518 - 138,595,715)
sequence
GATGCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGAAGATGTTCGGAAAAAAAAAAGCCTATGTGTGGTTGTG
TATTCTTATAGCCTCAACGCCGTCTTGGGGATGAGTGGAGGGAAAAAAAT
TCAGGCTTCCTTGCTGCCAACCTGGCTTGAAGTTCAGTAAGAAACCCTGT
TTCTAGGAAGTGTGGCAGAGAGTGAGAAAGCAAAACACCCAACATCCTAT
TCTGGCCTCTGTACCCATGCACAGGCATGAGCACCTACACACATGTGCAC
TTATGCAATACATGCACACACATACACATACATACACTCATAGACACACA
CACACATACACACACACTCTTACTTCTACTTCCTCAGCATGCACAACCAT
ACCCAATTCTATACAGCACAGGTGTAGCGGGGAGATGATACCCAGGACCA
GTATACTACATCCCCAGCTCTACCAGTTTTATAAATGTTTCGGGGAAAAG
CTGCATTTTTTAAGCCTGCCTCTCAGTTTGGCTGCAGTAAGTAGCTAGAG
CTGAGAAGTAGAAGAAGACCGCAGTGGAAGAATGTCAAGATGCTCCTTCC
CCACCTCAGCTCTAATCAAACCTCTTGTGGGCTAAAAGGTGGGCTGAAGG
GTGGATTCCATGGGGATATTGAAGGATGGGTCCTCTATTAAACTACATCA
GAAATCCAAGAGGAATCCAGGCCTGGCTCTCCTCTTCCACACTGAGCACA


NNNNCCTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTAGTCTGGGCTA
TAGCCTGATTCTTACCCAATAAAGAAAGACCAAACCAAACAAACAAAAAC
CTCAGAACTGCACAAAAGGTGCTAAGTTTCCAGTCATCGCTACCTTAATC
CTATAGTGAGTTACTCCAAAGAAAGAGGAAAGGATCCAGGAGGCGAAGCC
TCTCTTGACCTGTGCTTACAGCCAGGTGGTCTTTCTTGGTTCCCAGACAC
AGCTTGAGAGAGTAGGGTTAACAACAGGGCAAGGAGCTGGGTGTGATGGC
GCACACCTTTAATCCCAGCACTCGGGAGGCANANGNAGGCAGATTTCTGA
GTTCGAGGCCTTCCTGGTCTACAAAGTGAGTTCCAGGATGGCCAGGGCTA
TACAGAGAAACCCTGTTTCCAAAAAACCAAAAAAACCCCAAATCTATTGG
GTAAGATAAAGGTCCTGCCCACACCTGGATGGGTTTACTCTGAATTATGT
TGATTTCGATACAGTTTTTTTTCCTCGTATTTCATGGTTGTCCTTAAACT
CCCTATGTATATTATCGGTTGTTATATACCTTGATCTGTACAATTTCTCT
GCCTTATATTCTGGCTTCTATTATTTTTTTCATTCCGGTCTTTCTTACTA
TATCTGTTCGTGTCGCATGTCTTGTTTTATATTAACGTTTAATCAATTTT
TTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_i10.b1 MSMg01no532_i10.b1 CHROMAT_FILE:
MSMg01no532_i10.b1 PHD_FILE: MSMg01no532_i10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:28 2005
         (569 letters)



>mm_chr5_138410852_138411820
          Length = 969

 Score =  957 bits (495), Expect = 0.0
 Identities = 531/543 (97%)
 Strand = Plus / Plus

                                                                       
Query: 27  aaaaaaaagcctatgtgtggttgtgtattcttatagcctcaacgccgtcttggggatgag 86
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 227 aaaaaaaagcctatgtgtggttgtgtattcttatagcctcaacgctgtcttggggatgag 286

                                                                       
Query: 87  tggagggaaaaaaattcaggcttccttgctgccaacctggcttgaagttcagtaagaaac 146
           |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 287 tggagggaaaaagattcaggcttcctcgctgccaacctggcttgaagttcagtaagaaac 346

                                                                       
Query: 147 cctgtttctaggaagtgtggcagagagtgagaaagcaaaacacccaacatcctattctgg 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cctgtttctaggaagtgtggcagagagtgagaaagcaaaacacccaacatcctattctgg 406

                                                                       
Query: 207 cctctgtacccatgcacaggcatgagcacctacacacatgtgcacttatgcaatacatgc 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cctctgtacccatgcacaggcatgagcacctacacacatgtgcacttatgcaatacatgc 466

                                                                       
Query: 267 acacacatacacatacatacactcatagacacacacacacatacacacacactcttactt 326
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 467 acacacatacacatacatacactcatagatacacacacacatacacacacactcttactt 526

                                                                       
Query: 327 ctacttcctcagcatgcacaaccatacccaattctatacagcacaggtgtagcggggaga 386
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 527 ctacttcctcagcatgcacaactatacccaattctatacagcacaggtgtagcgaggaga 586

                                                                       
Query: 387 tgatacccaggaccagtatactacatccccagctctaccagttttataaatgtttcgggg 446
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 587 tgatacccaggaccagtatactacatccccagctctaccagttttataaatgtttcaggg 646

                                                                       
Query: 447 aaaagctgcattttttaagcctgcctctcagtttggctgcagtaagtagctagagctgag 506
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 647 aaaagctgcattttttaagcctgcctctcagtttggcggcagtaagtagctagagctgag 706

                                                                       
Query: 507 aagtagaagaagaccgcagtggaagaatgtcaagatgctccttccccacctcagctctaa 566
           |||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 707 aagtagaagaagactgtagtgaaagaatgtcaagatgctccttccccacctcagttctaa 766

              
Query: 567 tca 569
           |||
Sbjct: 767 tca 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_i10.g1 MSMg01no532_i10.g1 CHROMAT_FILE:
MSMg01no532_i10.g1 PHD_FILE: MSMg01no532_i10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:28 2005
         (300 letters)



>mm_chr5_138595315_138596014
          Length = 700

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   gctagtctgggctatagcctgattcttacccaataaagaaagaccaaaccaaacaaacaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gctagtctgggctatagcctgattcttacccaataaagaaagaccaaaccaaacaaacaa 342

                                                                       
Query: 64  aaacctcagaactgcacaaaaggtgctaagtttccagtcatcgctaccttaatcctatag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaacctcagaactgcacaaaaggtgctaagtttccagtcatcgctaccttaatcctatag 282

                                                                       
Query: 124 tgagttactccaaagaaagaggaaaggatccaggaggcgaagcctctcttgacctgtgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgagttactccaaagaaagaggaaaggatccaggaggcgaagcctctcttgacctgtgct 222

                             
Query: 184 tacagccaggtggtcttt 201
           ||||||||||||||||||
Sbjct: 221 tacagccaggtggtcttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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