BAC Information

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BAC

Clone NameMSMg01-532L06
Chromosome5 (Build37)
Map Location 55,521,756 - 55,521,901
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532L06.T7 (MSMg01no532_l06.b1)MSMg01-532L06.TJ (MSMg01no532_l06.g1)
ACCAG600798AG600799
length745950
length of high quality
(start - end)
463 (53 - 515)---
definitionCHROMAT_FILE: MSMg01no532_l06.b1 PHD_FILE: MSMg01no532_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:41 2005CHROMAT_FILE: MSMg01no532_l06.g1 PHD_FILE: MSMg01no532_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAATAAACCTATTACGTTTATTAGTGAAATTGTTTTAAA
TGAGAAAATTATGTTAACCATTATTTAACTAATTCTAATTAGTTAAATTA
TGCAAAGATGAAACATTTTGAAGTAGTAGGTATGATAATAGCATCCCCAA
GATGTTTCCCCTTCTAAGAAGGATTGAAGTATCCACACTTTGGTCTTCCT
TCTTCTTGAGCTTCATGTGTTTTGCAAATTGTATCTTGGGTATTCTGAGC
TTCTGGGCTAATATCCACTTATCAGTGAGTGCATATCATGTGTGTTCTTT
TGTGATTGGGTGAGGGGGAAGGTGATAGGGGATTGTCTGAGAGAATAATA
GGAAAGGAGATAATCTTTGAAATGTAAATAAAGTAAATATCTAATAAAAA
CAATAAGAATATTTAAAATGTGCATAAAATTATTTCATCTTCCACCTCTT
CTTCATCATTTCCATGACCATATCTTGGATTTACAGGAGATTTACTACAC
ACAGTTCTTTTAATGAAGCTTGGATTTGATGGCACTTCCATACTGTAGTT
ATGATCCACTTGCCTATTTGTAATGTCTCTATCTATTTTAGCATGATGGC
ACTGAGAAAAGTGACTCAATCATTTTCTAGTATAAACACTTACCCTTGAA
ATGCTTAGCCTTTTACCGGGATTTGCTTAAAATATGTTTGCCTAC
TTTATCTCTAATTCCCCTTTCTTCTAACTTTATNGNCCCCCCCCNNNNNN
NCNNNNNNNNNNNNNNNNNNNNNNNNNTTGTAGTTAGAAGAGCGTAGGGG
CGGCCACGNNCCCNNNNCGGAGGAGAGGNNNNNNTGGGAGTGTGGGGCGT
GGTGTCCTCACTTGAATAGCGCGCTTTTTCCATTTTTTACACGCCACGCC
CCCTCACTATCCTCCCTTTTTCTCCCTCCCCTTTTCTCTCCCCTCCTTTC
TATCTCCCAACACTTTCATCAATTTTTTTTACGCTCCTCCCTCTTTCTCT
CGAGGAATGTNNTTTTCTCTTTTCCCTAGTTTTTTCCGCACCCTACCTCC
TCTTCTCCTCCCCTCAACTGCCTATCTACCTCTCCTTTTCCTTTTCCATC
TTTTTTTTTTCCTCTCTCCCCCCTCCCCCACCTCCCTTATAATCCCCTTT
TTGCTTTTTTTTTCTTTTCCCCCTTCCCCCCCCCCTCTTATCCAATAAAT
AAAACAAATGGCGTTGCGCCCGCCCTCCTCTCATATGTCCGCCTTTTTTT
TCTAATATATATCGCGGGGTGGCTGCCCCCCCCCCCCCCCTCCCCTCTCT
TTTGGGGCGCGGTTTGCTACACAACCGTCCGCCGGTAGGGTGGGTGTGAT
GACNNCNCTTACCCCCGCTGGGTGTNTCTCCCCCCCCCCCCCCCCTGTGC
GAGTGGGAGAGAGAAGAGANAACATGNNNNCNNNNTTTTTCGCGGGGTTG
GGGCGTTTANTAGGCAAANAATATNTTTTTTTTTTTTATAAAAAGGGGGC
GGGTCGTGTGTGGTGGATATACAACCACACAGACATGTTTTTATTATTTT
GTAAGAGGNNNNNNNNAACAAACGAGCAAAGAATGACATCGACTCGGGCG
NAACACAAAAAAATTCTCCCCTCCCCCCTCCCTTCTCGCTTTCGCCCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_l06.b1 MSMg01no532_l06.b1 CHROMAT_FILE:
MSMg01no532_l06.b1 PHD_FILE: MSMg01no532_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:41 2005
         (463 letters)



>mm_chr5_55521552_55522414
          Length = 863

 Score =  259 bits (134), Expect = 2e-73
 Identities = 143/146 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaataaacctattacgtttattagtgaaattgttttaaatgagaaaattatgtta 64
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gaattcaataaacctaaaatgtttattagtgaaattgttttaaatgagaaaattatgtta 291

                                                                       
Query: 65  accattatttaactaattctaattagttaaattatgcaaagatgaaacattttgaagtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 accattatttaactaattctaattagttaaattatgcaaagatgaaacattttgaagtag 231

                                     
Query: 125 taggtatgataatagcatccccaaga 150
           ||||||||||||||||||||||||||
Sbjct: 230 taggtatgataatagcatccccaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)