BAC Information

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BAC

Clone NameMSMg01-532L07
Chromosome5 (Build37)
Map Location 58,096,062 - 58,262,215
singlet/doubletdoublet
Overlap genePcdh7
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
Downstream geneLOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532L07.T7 (MSMg01no532_l07.b1)MSMg01-532L07.TJ (MSMg01no532_l07.g1)
ACCAG600800AG600801
length760759
length of high quality
(start - end)		704 (50 - 753)596 (85 - 680)
definitionCHROMAT_FILE: MSMg01no532_l07.b1 PHD_FILE: MSMg01no532_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:42 2005CHROMAT_FILE: MSMg01no532_l07.g1 PHD_FILE: MSMg01no532_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,261,519 - 58,262,215)(58,096,062 - 58,096,657)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCCATATTATACCCTGGCTTTCATCACTCACACGTACATAA
ACATGGATTATGTTCCCCATCAGAGTGTTTATCATTTAGTTATATTGTTT
AAATGCACACAAGGCACAAAAAGAATAGGAAAAAAACTGAAGCACTAGGA
ATTGCTATTACCCAAACAGAAATCTTTGAATATACATCATAAAATGGAAG
GCACTGAAGAAACATCATCAAAGAAGCTAAATGAGAAAATATGCAATGCT
TCCTCATAACTGCTTAGGAAAAGGCAAGGATAGTCAGCCAGAAACTTGAG
TCAACAGCATAATGTTTAAAATTTGAGCTGTGGAATCTGACATACCATTT
AAGTTTCAGCTGTGCCATTTTGTAGGAGCCTAACATGCAAATGAGCCTAA
ATCCATGCTTCTTCCCCTTAAAAAAATCACATTATAATAGGGATAAATAA
GATGATTGTGTAATAAAAGCCTGAAATTTTGGAAAAGCGTAGCTAAGTAT
AATAGCATCACAAGGAAAATATCCATAGCACCTGGTGTCATTAATTGGAG
TCCTAGTGACTACTGCATGAATTTTTACTTCTGTCAGAATACATTTCTAA
TAAGATTGATGAAGAGTGGTGAAAATGATAGTTACTACAGGGCATGTAAT
GATTGATAAGAACTATTAATAAGAACTAATGTGTCCTCAAACTTGACCCC
CTTTCAGGGG

TTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTGATCTGATACAT
TCTGAATTTTCTTTAGGCCACTTTTCTTTATAATTGCCTTCACAGTCACT
TTTACTAACTACAAAAGACTCAAAATAAAATAAGATCTTTGAACTTATTA
TTTGAATAAATGTAATATTCTCCAGCTCTGTCAGACATTTAATTCACATT
AAGAGGTTCTGAATGCCATTTGACCATTTCAAGGGATGAAAGAAATAGTT
ACAAAAATATCTCAAGTACGCTGATGAGGGAATCCAGTGATGCTCACAGA
AATTGCAGTATCATAGGAATAATTGTACAGCCTTTTAAAATGACAAATGT
GAAGATGGTTATACTTATTAGACAGTCGGCTCTAATTGACCAGTTTTCAT
AATGTCTTCAGTAATTTTATATCATAGCCATACTCTACATGAATAGGATT
CTTCATAAGATAAACCATAAATATTTTCATAACAAATGAATTAAATTTGT
AATTTATGTGTTATTATGCCCAATACTGATTATAGTAAGATCAAGGGAAT
AAGACAGCAAGGGATGCAAAGTTGTTTGTGTAAGGTGGATCTGGAAAGAG
TTGGAAGAAATAACAAACAAGAGCAACTGCATTGTATGAAATCATCAAAG
CACTAATAAAAATATTTCTAAAACACAATAGGAGATGCCGGGATGACTTA
TCTCACGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_l07.b1 MSMg01no532_l07.b1 CHROMAT_FILE:
MSMg01no532_l07.b1 PHD_FILE: MSMg01no532_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:42 2005
         (704 letters)



>mm_chr5_58261315_58262418
          Length = 1104

 Score = 1317 bits (681), Expect = 0.0
 Identities = 693/697 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccatattataccctggctttcatcactcacacgtacataaacatggattatgt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaattctccatattagaccctggctttcatcactcacacgtacataaacatggattatgt 842

                                                                       
Query: 65  tccccatcagagtgtttatcatttagttatattgtttaaatgcacacaaggcacaaaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tccccatcagagtgtttatcatttagttatattgtttaaatgcacacaaggcacaaaaag 782

                                                                       
Query: 125 aataggaaaaaaactgaagcactaggaattgctattacccaaacagaaatctttgaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aataggaaaaaaactgaagcactaggaattgctattacccaaacagaaatctttgaatat 722

                                                                       
Query: 185 acatcataaaatggaaggcactgaagaaacatcatcaaagaagctaaatgagaaaatatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acatcataaaatggaaggcactgaagaaacatcatcaaagaagctaaatgagaaaatatg 662

                                                                       
Query: 245 caatgcttcctcataactgcttaggaaaaggcaaggatagtcagccagaaacttgagtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caatgcttcctcataactgcttaggaaaaggcaaggatagtcagccagaaacttgagtca 602

                                                                       
Query: 305 acagcataatgtttaaaatttgagctgtggaatctgacataccatttaagtttcagctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acagcataatgtttaaaatttgagctgtggaatctgacataccatttaagtttcagctgt 542

                                                                       
Query: 365 gccattttgtaggagcctaacatgcaaatgagcctaaatccatgcttcttccccttaaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gccattttgtaggagcctaacatgcaaatgagcctaaatccatgcttcttccccttaaaa 482

                                                                       
Query: 425 aaatcacattataatagggataaataagatgattgtgtaataaaagcctgaaattttgga 484
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 481 aaatcacattataatagggataaataggatgattgtgtaaaaaaagcctgaaattttgga 422

                                                                       
Query: 485 aaagcgtagctaagtataatagcatcacaaggaaaatatccatagcacctggtgtcatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaagcgtagctaagtataatagcatcacaaggaaaatatccatagcacctggtgtcatta 362

                                                                       
Query: 545 attggagtcctagtgactactgcatgaatttttacttctgtcagaatacatttctaataa 604
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 361 attggagtcctagtgactactgcatggatttttacttctgtcagaatacatttctaataa 302

                                                                       
Query: 605 gattgatgaagagtggtgaaaatgatagttactacagggcatgtaatgattgataagaac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gattgatgaagagtggtgaaaatgatagttactacagggcatgtaatgattgataagaac 242

                                                
Query: 665 tattaataagaactaatgtgtcctcaaacttgacccc 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 tattaataagaactaatgtgtcctcaaacttgacccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no532_l07.g1 MSMg01no532_l07.g1 CHROMAT_FILE:
MSMg01no532_l07.g1 PHD_FILE: MSMg01no532_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:42 2005
         (596 letters)



>mm_chr5_58095862_58096857
          Length = 996

 Score = 1137 bits (588), Expect = 0.0
 Identities = 594/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgatctgatacattctgaattttctttaggccacttttctttataattgccttcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgatctgatacattctgaattttctttaggccacttttctttataattgccttcaca 260

                                                                       
Query: 61  gtcacttttactaactacaaaagactcaaaataaaataagatctttgaacttattatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcacttttactaactacaaaagactcaaaataaaataagatctttgaacttattatttg 320

                                                                       
Query: 121 aataaatgtaatattctccagctctgtcagacatttaattcacattaagaggttctgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaatgtaatattctccagctctgtcagacatttaattcacattaagaggttctgaat 380

                                                                       
Query: 181 gccatttgaccatttcaagggatgaaagaaatagttacaaaaatatctcaagtacgctga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gccatttgaccatttcaagggatgaaagaaatagttacaaaaatatctcaagtacgctca 440

                                                                       
Query: 241 tgagggaatccagtgatgctcacagaaattgcagtatcataggaataattgtacagcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagggaatccagtgatgctcacagaaattgcagtatcataggaataattgtacagcctt 500

                                                                       
Query: 301 ttaaaatgacaaatgtgaagatggttatacttattagacagtcggctctaattgaccagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaaatgacaaatgtgaagatggttatacttattagacagtcggctctaattgaccagt 560

                                                                       
Query: 361 tttcataatgtcttcagtaattttatatcatagccatactctacatgaataggattcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcataatgtcttcagtaattttatatcatagccatactctacatgaataggattcttc 620

                                                                       
Query: 421 ataagataaaccataaatattttcataacaaatgaattaaatttgtaatttatgtgttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataagataaaccataaatattttcataacaaatgaattaaatttgtaatttatgtgttat 680

                                                                       
Query: 481 tatgcccaatactgattatagtaagatcaagggaataagacagcaagggatgcaaagttg 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgcccaatactgattgtagtaagatcaagggaataagacagcaagggatgcaaagttg 740

                                                                   
Query: 541 tttgtgtaaggtggatctggaaagagttggaagaaataacaaacaagagcaactgc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgtgtaaggtggatctggaaagagttggaagaaataacaaacaagagcaactgc 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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