CGCGCAAGGTAGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCCTCAGACTCCTCCTCTTTACCTAACTTGTCT
GGGTCTATGGATTGTAGTTTAGTAATTTACTTAATGGTTCATATCTACTT
ATAAGTGAATACATACCATATTTATCTTTCTGGTTCTGGGTTACCTCATT
CAGGATCATTTCTTTTCTAGTCCTCTCCACTTGCCTGCAAATTTCATTGA
TGCCATCGTTTAACAGCTGTGTATTACTCTATTGTATAAACATAGCACTT
TTTCTTTATCTACACTTCTGTTGAGGGACAGCTAGGTTGTTTTCAGTTTC
AGCTACTATGAATAAACTGACAATGAACATGGTTGAGCAAATGTCCCTGT
GGTGGTATGGAACATTCTTTGGGTATATATACACAAGAGTAGCTAGATCT
TGAAGTAGATCTATTCCCAACCCTCTGAGGTCTAGCCATATTGATTTCTA
TAATGGCTGTATAAGTTTGCACTCCCATCAGCAACAGAAGAGTGCTTGCT
TTGCTCTGCATCATTGCCAACATGAGCTATAACTTGTATTATTTTTGATA
TATAGTTTCTTGTGATACACACATATATAAACATATATACATATGTATAT
ATACATATTATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA
TAGATAGATAGATAGATAGATN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAACCACTGCCTTGGTAACTGTAAGT
CACAAGAGGAGTAAAAATATTAAAGTAATATTGTAATTTTTATTTGATAT
TCTAGCATTATTATTGCTGCAAATAATTTTTATCATATCGTTTAGAAACG
ATACAATTTGTAAAATTTTAGAGTTCAATGGAACACAATGGATAGTCCTC
TTAAATTTGTTCAGTTCCACTGTTGGTTTTGAATAATAACAAAAGAGTTC
AAAATCATACTGATATTTGACTTCTGTATTTGTTTCCAAATAACAGCTAT
ATTTGTTTCTGTAGGTCATATCATCTACATGTCAATTGAATGAACTATAA
ATTTTCTACTGATTTATTTTATAGAAAATGAAATCAACACCCTTATTCCT
TCCCTTTTGCCTAATGTTTTATCATTGATAAGAAAAATAAGTCATTTTTA
AAAATGGTAAACTTTCAAATTAGTAGGAGTATCAGAAAAGACAGAAGAAT
TGAAGTAGCCAACTGATGGCCATTATTACCTTTAACTAAGAAAATATATA
ATTTAGCTATTTTTAAATATAAAAGATGAAAAATATGTCTAAAATAACTC
ATTTTCTCAAAGTAGATGAAGAGTTGCAAGATGCTAAAGACACAAACACA
TCTTGGAGAGGGTTTGACAGTAATATATAAATTGCACTAAGTA

Query= MSMg01no533_a07.g1 MSMg01no533_a07.g1 CHROMAT_FILE:
MSMg01no533_a07.g1 PHD_FILE: MSMg01no533_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:07 2005
         (668 letters)



>mm_chr5_84690765_84691832
          Length = 1068

 Score = 1268 bits (656), Expect = 0.0
 Identities = 665/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaccactgccttggtaactgtaagtcacaagaggagtaaaaatattaaagtaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaccactgccttggtaactgtaagtcacaagaggagtaaaaatattaaagtaatatt 260

                                                                       
Query: 61  gtaatttttatttgatattctagcattattattgctgcaaataatttttatcatatcgtt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gtaatttttatttgatattctagcattattattgctgcaaatcatttttatcatatcgtt 320

                                                                       
Query: 121 tagaaacgatacaatttgtaaaattttagagttcaatggaacacaatggatagtcctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaaacgatacaatttgtaaaattttagagttcaatggaacacaatggatagtcctctt 380

                                                                       
Query: 181 aaatttgttcagttccactgttggttttgaataataacaaaagagttcaaaatcatactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatttgttcagttccactgttggttttgaataataacaaaagagttcaaaatcatactg 440

                                                                       
Query: 241 atatttgacttctgtatttgtttccaaataacagctatatttgtttctgtaggtcatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttgacttctgtatttgtttccaaataacagctatatttgtttctgtaggtcatatc 500

                                                                       
Query: 301 atctacatgtcaattgaatgaactataaattttctactgatttattttatagaaaatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctacatgtcaattgaatgaactataaattttctactgatttattttatagaaaatgaa 560

                                                                       
Query: 361 atcaacacccttattccttcccttttgcctaatgttttatcattgataagaaaaataagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcaacacccttattccttcccttttgcctaatgttttatcattgataagaaaaataagt 620

                                                                       
Query: 421 catttttaaaaatggtaaactttcaaattagtaggagtatcagaaaagacagaagaattg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catttttaaaaatggtaaactttcaaattagtaggagtatcagaaaagacagaagaattg 680

                                                                       
Query: 481 aagtagccaactgatggccattattacctttaactaagaaaatatataatttagctattt 540
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 681 aagtagccaactgatggccattattacctttaactgggaaaatatataatttagctattt 740

                                                                       
Query: 541 ttaaatataaaagatgaaaaatatgtctaaaataactcattttctcaaagtagatgaaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaatataaaagatgaaaaatatgtctaaaataactcattttctcaaagtagatgaaga 800

                                                                       
Query: 601 gttgcaagatgctaaagacacaaacacatcttggagagggtttgacagtaatatataaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttgcaagatgctaaagacacaaacacatcttggagagggtttgacagtaatatataaat 860

                   
Query: 661 tgcactaa 668
           ||||||||
Sbjct: 861 tgcactaa 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)