Query= MSMg01no533_a20.b1 MSMg01no533_a20.b1 CHROMAT_FILE:
MSMg01no533_a20.b1 PHD_FILE: MSMg01no533_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:10 2005
(376 letters)
>mm_chr5_91271149_91271920
Length = 772
Score = 687 bits (355), Expect = 0.0
Identities = 364/369 (98%), Gaps = 4/369 (1%)
Strand = Plus / Minus
Query: 5 gaattcctcgagatgagatcctagagataagtggggttgggattcttttctctaatcact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattcctcgagatgagatcctagagataagtggggttgggattcttttctctaatcact 510
Query: 65 gactgatttcactgctcactaaggtcaccatgaagaaacaacacccactgttcagttgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gactgatttcactgctcactaaggtcaccatgaagaaacaacacccactgttcagttgca 450
Query: 125 gatctggggcttcatccactttgcaaactaaagatcaattcacaaaagttaattacctgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gatctggggcttcatccactttgcaaactaaagatcaattcacaaaagttaattacct-- 392
Query: 185 taagtaagtgttaacttttaaacagagaccagggtaagtgcaagagtatgtatagatatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 --agtaagtgttaacttttaaacagagaccagggtaagtgcaagagtatgtatagatatc 334
Query: 245 cagggaagttttcagaagtctggcaatgcgtagcccatgacaccttactctctggaagaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cagggaagttttcagaagtctggcaatgcgtagcccatgacaccttactctctggaagaa 274
Query: 305 cacggtcattgttccagtgaaaataagaactcagggcaatagaatcaggtaggaataagt 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 273 cacggtcattgttccagtgaaaataagaactcagggcaatagaatcaggtcggaataagt 214
Query: 365 ggacaagaa 373
|||||||||
Sbjct: 213 ggacaagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 772
Length adjustment: 9
Effective length of query: 367
Effective length of database: 763
Effective search space: 280021
Effective search space used: 280021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_a20.g1 MSMg01no533_a20.g1 CHROMAT_FILE:
MSMg01no533_a20.g1 PHD_FILE: MSMg01no533_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:10 2005
(653 letters)
>mm_chr5_91224084_91225136
Length = 1053
Score = 1112 bits (575), Expect = 0.0
Identities = 619/653 (94%), Gaps = 30/653 (4%)
Strand = Plus / Plus
Query: 1 attcctctcaaactcattaaaaatataatggtgatattcgagaccatttactgcaacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctctcaaactcattaaaaatataatggtgatattcgagaccatttactgcaacaga 260
Query: 61 aaggaagtgatgtaagtagtaaaggcatggaagaaggtggagactcttgcatgaaagttt 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 aaggaagtgatgtaagtagtaaaggcatggaggaaggtggagactcttgcatgaaagttt 320
Query: 121 tctggttggcatcttctttcagaatgtgtttcagtgattctcaacctgtaggttgtataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggttggcatcttctttcagaatgtgtttcagtgattctcaacctgtaggttgtataa 380
Query: 181 tcctttcatagaggtttcctgaagctatcagaaaatatagatgttaacattatgattcat 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctttcataggggtttcctgaagctatcagaaaatatagatgttaacattatgattcat 440
Query: 241 aacagtagcaacattacagttgtaaggtagcactgaaaatatttcatggttgggggggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacagtagcaacattacagttgtaaggtagcactgaaaatatttcatggttgggggggag 500
Query: 301 cacaacatgaggaactgtattgaggagttgcagcattagggagattgagtaagaagcacg 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 cacaacatgaggaactgtattgaggagttgcagcattagggaggttgagtaagaagcacg 560
Query: 361 gtgctacataaagagagagaaggctgtggctctggacaagtatgggaaaactattaccta 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgctacataaagagacagaaggctgtggctctggacaagtatgggaaaactattaccta 620
Query: 421 gtagttgtgctcgctctcatttctaaaactggcatgcagtctttccagaaaaacaaacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagttgtgctcgctctcatttctaaaactggcatgcagtctttccagaaaaacaaacaa 680
Query: 481 acaaacaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaaacaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaaccaaacca-------- 732
Query: 541 caaaccaaaccaaaccaaaccactaatcaaagaaagctccttagcagaggagacagttga 600
||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ----------------------ctaatcaaagaaagctccttagcagaggagacagttga 770
Query: 601 tttcataaactctgctgagaaaagcgaactttgaagtcaatgattactcagaa 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tttcataaactctgctgagaaaagcgaactttgaagtcaatgattactcagaa 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
