Query= MSMg01no533_e18.b1 MSMg01no533_e18.b1 CHROMAT_FILE:
MSMg01no533_e18.b1 PHD_FILE: MSMg01no533_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:28 2005
(661 letters)
>mm_chr5_123303134_123304194
Length = 1061
Score = 1220 bits (631), Expect = 0.0
Identities = 649/655 (99%)
Strand = Plus / Minus
Query: 7 gaattctctcctacttcctatatttttggtgtttgagacagtgtctacatagttctaagt 66
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1024 gaattctctcctacttcctatatttttggtgtttgagacagagtctacatagttctaagt 965
Query: 67 gtactggaactcactatgtagacaaaattggcctcaactcacatagatccactgtctctg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gtactggaactcactatgtagacaaaattggcctcaactcacatagatccactgtctctg 905
Query: 127 cctcccaagtgctaggattaaaggcctcagcctcaccctggcttgagattctttttcaac 186
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 cctctcaagtgctaggattaaaggcctcagcctcaccctggcttgagattctttttcaac 845
Query: 187 tagtgaaagcttcatcaaagaacccatctacttcacagactacagatttctgttataaat 246
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tagtgaaagcttcttcaaagaacccatctacttcacagactacagatttctgttataaat 785
Query: 247 tctggacaattccaatatgctacaatttgaatgtccttgtgttgaatgttttgaatctta 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tctggacaattccaatatgctacaatttgaatgtccttgtgttgaatgttttgaatctta 725
Query: 307 gcaacagagatataaatgaatgcattatgatttaaatttcagttaaattttctaacagaa 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gcaacagagatataaatgaatgcattatgatttaaatttcagttaaattttctaacagaa 665
Query: 367 ctaagagaaaaagacaattagcatgcaaactttagccgtacttaagaaatgtgcaaagaa 426
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 664 ctaagagaaaaagacaattagcatgcaaactttagccgtacttaagaaatgtgaaaagaa 605
Query: 427 aaggctacttcctgaaactgatgcttcaaaacaaatccatggggctcactgctttaatac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaggctacttcctgaaactgatgcttcaaaacaaatccatggggctcactgctttaatac 545
Query: 487 tagctatctaacctgatactacaaaggaagaaatcctacatcacaaaacagatgctgtcc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tagctatctaacctgatactacaaaggaagaaatcctacatcacaaaacagatgctgtcc 485
Query: 547 tttaaaactgaacatttcttcctattgtatgcgcacttaagtacatgcctgtgtgggggc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tttaaaactgaacatttcttcctattgtatgcgcacttaagtacatgcctgtgtgggggc 425
Query: 607 agcggtgggggcgggagggcagctttgtgaagctggttctcttcccacctttaca 661
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 424 agcggtgggggcgggagggcagctttgtgaagctggttctctttccacatttaca 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_e18.g1 MSMg01no533_e18.g1 CHROMAT_FILE:
MSMg01no533_e18.g1 PHD_FILE: MSMg01no533_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:28 2005
(501 letters)
>mm_chr5_123133412_123134309
Length = 898
Score = 862 bits (446), Expect = 0.0
Identities = 487/504 (96%), Gaps = 9/504 (1%)
Strand = Plus / Plus
Query: 1 acgtgtagaccaggctggccttgaactcagagattccacctgcctctgcctcccgagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgtgtagaccaggctggccttgaactcagagattccacctgcctctgcctcccgagtgc 260
Query: 61 tgggattaaagggtgtagcaccaccaccaggctcggagatagtttttaaaagtagactgt 120
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 261 tgggattaaagggtgtagcaccaccaccaggctcggagatatttttttaaagtagactgt 320
Query: 121 atttgacttcagagttgagctttttactccaagcattctatggaagagctacaggcttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgacttcagagttgagctttttactccaagcattctatggaagagctacaggcttcc 380
Query: 181 ctccctgtagcctcccagtctctacacctttatctttgatgcctacttccgagtgtactt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ctccctgtagcctcccagtctctacacctttatctttgatgcctacttccaagtgtactt 440
Query: 241 at--cgagtgtacttgctaaggcttcagactgtgactgaccactggactcttctagtgtt 298
|| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 atatcgc-----cttgctaaggcttcagacagtgactgaccactggactcttctagtgtt 495
Query: 299 tccttgtgcctttggccactggtgctctcctgagggtgacatgccactctgtggataaaa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tccttgtgcctttggccactggtgctctcctgagggtgacatgccactctgtggataaaa 555
Query: 359 acgacgctttcttcagcagcaatgatatttgcatctttatttttggtctactgcgtgggc 418
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atgacgctttcttcagcagcaatgatatttgcatctttatttttggtctactgcgtgggc 615
Query: 419 aatgccgtggtctgaggccgtgagcagttcatttctcagggtaaagctcttgttgtt-gt 477
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 616 aatgccgtggtctgaggccgtgagcagttcatttctcagggtaaagttcttgttgttaga 675
Query: 478 tagcattctgttctgtcagttgcc 501
| ||||||||||||||||||||||
Sbjct: 676 t-gcattctgttctgtcagttgcc 698
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 898
Length adjustment: 10
Effective length of query: 491
Effective length of database: 888
Effective search space: 436008
Effective search space used: 436008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
