BAC Information

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BAC

Clone NameMSMg01-533P14
Chromosome5 (Build37)
Map Location 88,457,331 - 88,458,015
singlet/doubletsinglet
Overlap genenone
Upstream geneUgt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1
Downstream geneEG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533P14.T7 (MSMg01no533_p14.b1)MSMg01-533P14.TJ (MSMg01no533_p14.g1)
ACCAG601769AG601770
length738719
length of high quality
(start - end)
675 (64 - 738)564 (116 - 679)
definitionCHROMAT_FILE: MSMg01no533_p14.b1 PHD_FILE: MSMg01no533_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:19 2005CHROMAT_FILE: MSMg01no533_p14.g1 PHD_FILE: MSMg01no533_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCATTCTCCTNCCTTCCTTCTTTTTGGGGTCGCTTXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCCATGAATACTACAATGAAAGCAAGCCC
ACTGTAGCTATTATCATAGTAATTTTACAAACAACCCAAACTCCACAGCT
GCAGATTCTGAATACTTTAAATAGTAGGCTACAAGTGGGGGCAGAAGCAT
TTGAGAACCCTTATCAATAGTTTTGAAAAATAAATCCCTATCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTT
TTTTACCTACCACCACCATCAACAACAAAATAGCAGGAATTAACAATCAT
TGGTCCTTAATGGCTCTCAACATCAATGGACTCAGTTCCCAAGTGAAGAG
AAAAAGCTAACAGACTAGATGCAAAAACATGATCCAAACTCCCACTGCAT
ACCAAAAATATACCTCAATATCAAAGACAGGCATTACCTCAGACTACAGG
GTTGGAAAAAAAAAGATTTTCCAAGTAAATGGACCCAAGAAGCCAACTTG
TGTACCATTTTATTATCTAACCAAATAGCCTTCCAGTCAAAACTAATCAA
AAGATATAAGGAGGGACACCTCATATACATCAAAGAAAAACCTATCAGGA
TGACATCATGCTGCACATATCTGCTCCCAACACTAGGGTACCACATATGT
AACAAGAAACATTACTAAAGTTTAAAGCACACATAAAN
CTATTNTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATGC
CGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACTTCACTCCAGTCAGAA
TGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA
GAAAGGGGAACACTCCTCCATTGTTGGTCGGATTGCAAGCTTGTACAACT
ACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTAC
AGGAGGATCCAGCAATACCTCTCCTGGGCATCTATCCAGAAGATGTCCCA
ACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTAT
AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTTAACAGAGGAATGGA
TACAGAAAATGTGGTACATTTGTTCCCCTTTCTAAGAAGGACCCACACTT
TGGTCTTCCTTCTTCTTGAGCTTCAGGTGGCCTGTAAATTATATCTTGGG
TATTCTGAGCTTTTAGGCTAATATCCACTTATCAGTGAGTACAAACTAGT
ATGTTGTTTTGGGACTAGGTTACTTCACTCAGGATGATATTTTCTAATTC
CATCCATTTGCCTAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_p14.b1 MSMg01no533_p14.b1 CHROMAT_FILE:
MSMg01no533_p14.b1 PHD_FILE: MSMg01no533_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:19 2005
         (675 letters)



>mm_chr5_88457128_88458202
          Length = 1075

 Score = 1228 bits (635), Expect = 0.0
 Identities = 667/685 (97%), Gaps = 14/685 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatgaatactacaatgaaagcaagcccactgtagctattatcatagtaatttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatgaatactacaatgaaagcaagcccactgtagctattatcatagtaatttt 263

                                                                       
Query: 64  acaaacaacccaaactccacagctgcagattctgaatactttaaatagtaggctacaagt 123
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 acaaacaatccaaactccacagctgcagattctgactactttaaatagtaggctacaagt 323

                                                                       
Query: 124 gggggcagaagcatttgagaacccttatcaatagttttgaaaaataaatccctat----- 178
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
Sbjct: 324 gggggcagaagcatttgagaacccttattaatagttttgaaaaataaatccctatctatc 383

                                                                       
Query: 179 ---ctatctatctatctatctatctatctatctatctatctatctat----ctatctatc 231
              ||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 384 tacctatctatctatctatctatctatctatctatctatctatctatatatctatctatc 443

                                                                       
Query: 232 tatcttttttacctaccaccaccatcaacaacaaaatagcaggaattaacaatcattggt 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatcttttttacctaccaccaccatcaacaacaaaatagcaggaattaacaatcattggt 503

                                                                       
Query: 292 ccttaatggctctcaacatcaatggactcagttcccaagtgaagagaaaaagctaacaga 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccttaatggctctcaacatcaatggactcagttcccaagtgaagagaaaaagctaacaga 563

                                                                       
Query: 352 ctagatgcaaaaacatgatccaaactcccactgcataccaaaaatatacctcaatatcaa 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctagatgcaaaaacatgatccaaactcccactgcataccaaaaatatacctcaatatcaa 623

                                                                       
Query: 412 agacaggcattacctcagactacagggttggaaaaaaaaa--gattttccaagtaaatgg 469
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 624 agacaggcattacctcagactacagggttggaaaaaaaaaaagattttccaagtaaatgg 683

                                                                       
Query: 470 acccaagaagccaacttgtgtaccattttattatctaaccaaatagccttccagtcaaaa 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acccaagaagccaacttgtgtaccattttattatctaaccaaatagccttccagtcaaaa 743

                                                                       
Query: 530 ctaatcaaaagatataaggagggacacctcatatacatcaaagaaaaacctatcaggatg 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctaatcaaaagatataaggagggacacctcatatacatcaaagaaaaacctatcaggatg 803

                                                                       
Query: 590 acatcatgctgcacatatctgctcccaacactagggtaccacatatgtaacaagaaacat 649
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 804 acatcatgctgcacatatctgctcccaacactagggcaccacatatgtaacaagaaacat 863

                                    
Query: 650 tactaaagtttaaagcacacataaa 674
           |||||||||||||||||||||||||
Sbjct: 864 tactaaagtttaaagcacacataaa 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)