Query= MSMg01no534_i19.b1 MSMg01no534_i19.b1 CHROMAT_FILE:
MSMg01no534_i19.b1 PHD_FILE: MSMg01no534_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:06 2005
(629 letters)
>mm_chr5_36230166_36231194
Length = 1029
Score = 1181 bits (611), Expect = 0.0
Identities = 620/623 (99%)
Strand = Plus / Plus
Query: 7 attcctgcatccaaaggaccctctaacaatgcatccagacctgatgatacatgcctgtga 66
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attcctgcacccaaaggaccctctaacaatgcatccagacctgatgatacatgcctgtga 266
Query: 67 ggccaggcagcaagatcagaaagaaggctctacaagcccctatcttacactaaaagctaa 126
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 267 ggccaggcagcaagatcagaaagaaggctctacaagcccctatcttccactaaaagctaa 326
Query: 127 gtaaaagaataccaatacccgctccacaagcgttggcagactagaatcccatggccgctg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtaaaagaataccaatacccgctccacaagcgttggcagactagaatcccatggccgctg 386
Query: 187 cttacaatgaggcatagaggacttcctccccactagcaaaaaatccatcaccatcccagg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cttacaatgaggcatagaggacttcctccccactagcaaaaaatccatcaccatcccagg 446
Query: 247 tcccgtaggagatatttaccaggtgttccagtaccagtggcaactccaggtgggtttcct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcccgtaggagatatttaccaggtgttccagtaccagtggcaactccaggtgggtttcct 506
Query: 307 ttgtcatatgattctttaagtcctgagatgaccacagatccaaaggacatcaagcaactc 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttgtcatatgattctttaagtcctgagatgaccacagatccaaaggacatcaagcaactc 566
Query: 367 tgaggcctacagttgtgcctctgtccagcggatagcctcttggtcttgaccccagtctca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgaggcctacagttgtgcctctgtccagcggatagcctcttggtcttgaccccagtctca 626
Query: 427 tccttccctgcctccttccaaggctactgaccctacctttatactcagagcctctggggt 486
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tccttccctgcctccttccaaggctactgaccctacctttatactcagagcctctggggc 686
Query: 487 agtacaccaatcccaatgtgtcagcctctgggagctgctctgggccagccctgttcccag 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 agtacaccaatcccaatgtgtcagcctctgggagctgctctgggccagccctgttcccag 746
Query: 547 cttgggtcagctctccttctctttcaggctccttgactacctcttcggaggtaaagaaag 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 cttgggtcagctctccttctctttcaggctccttgactacctcttcggaggtaaagaaag 806
Query: 607 ccagatggaactcacacagggtc 629
|||||||||||||||||||||||
Sbjct: 807 ccagatggaactcacacagggtc 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_i19.g1 MSMg01no534_i19.g1 CHROMAT_FILE:
MSMg01no534_i19.g1 PHD_FILE: MSMg01no534_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:06 2005
(568 letters)
>mm_chr5_36397090_36398057
Length = 968
Score = 973 bits (503), Expect = 0.0
Identities = 548/581 (94%), Gaps = 30/581 (5%)
Strand = Plus / Minus
Query: 1 acaccagtgctcactactggggacagtgccctcatctgcaaaaagttcacccgagaaggg 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 918 acaccagtgctcactactggggacagtgccctcatccgcaaaaagttcacccgagaaggg 859
Query: 61 cctagtctggacaggcgcctcatggccctctcttttctcttttggacaccaggggcaggg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 858 cctagtctggacaggcgc-----------ctcttttctcttttggacaccaggggcaggg 810
Query: 121 gtggaagtattatttagcccatgtgcaggttagg-------------aaaccctcccaca 167
|||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 809 gtggaagtattattta------gtgcaggttaggaaaccctcccaccaaaccctcccaca 756
Query: 168 tcaacctttcaagacagaccagatctgagtagaaccagccacactgtctaccaagatctt 227
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tcaacctttcaagacaggccagatctgagtagaaccagccacactgtctaccaagatctt 696
Query: 228 ccctcacctctgctcttggggcccccaggccagtggggagagccataggaggcccactgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ccctcacctctgctcttggggcccccaggccagtggggagagccataggaggcccactgg 636
Query: 288 tgtttctactgttagatggtgagtctggctcagagagtagcccttggcagacaatgggct 347
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgcttctactgttagatggtgagtctggctcagagagtagcccttggcagacaatgggct 576
Query: 348 ccgtcccttcgagtgggaggggacctcccaggtagagggaacctcaatgtgtctccagct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ccgtcccttcgagtgggaggggacctcccaggtagagggaacctcaatgtgtctccagct 516
Query: 408 gtcagcggcagtgtggagccattatccccagcgaaatgatgaatgtaatcgtttgtttgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtcagcggcagtgtggagccattatccccagcgaaatgatgaatgtaatcgtttgtttgc 456
Query: 468 gaagagagcccatttgtcagtgttccctcccagctggggctgcagagggacagtggcatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaagagagcccatttgtcagtgttccctcccagctggggctgcagagggacagtggcatc 396
Query: 528 ttgcagcactcctctggcaacactggagcactgaagccctc 568
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgcagcactcctctggcaacactggagcactgaagccctc 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
