MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-534I24
Chromosome	5 (Build37)
Map Location	90,306,153 - 90,306,574
singlet/doublet	singlet
Overlap gene	Adamts3
Upstream gene	Slc4a4, Gc, LOC622870, Npffr2, LOC631105
Downstream gene	EG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
Link	Open Mouse BAC browser

Click to get alignment info.

name	Slc4a4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54403 MGI:1927555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14473 MGI:95669
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622870 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622870
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins pseudo : _no_value

name	Npffr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104443 MGI:1860130
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC631105 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:631105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 58 ESTs

name	Adamts3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330119 MGI:3045353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665733 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665733 MGI:3643585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 9 Proteins

name	Cox18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231430 MGI:2448532
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ankrd17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:81702 MGI:1932101
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Alb1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11657 MGI:87991
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Afp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11576 MGI:87951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Afm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:280662 MGI:2429409
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040105 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC622307 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622307
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Rassf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73246 MGI:1920496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cxcl5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20311 MGI:1096868
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppbp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57349 MGI:1888712
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cxcl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56744 MGI:1888711
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1960 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330122 MGI:3037818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cxcl15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20309 MGI:1339941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc4a4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133922579 GeneID:54403 MGI:1927555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 4 (anion exchanger), member 4 transcript_id : NM_018760.2

name	Gc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:51172611 GeneID:14473 MGI:95669
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : group specific component transcript_id : NM_008096.1

name	Npffr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366674 GeneID:104443 MGI:1860130
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuropeptide FF receptor 2 transcript_id : NM_133192.3

name	LOC631105 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254002 GeneID:631105
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 58 ESTs product : similar to fimbriae-associated protein Fap1, transcript variant 1 transcript_id : XM_904722.3

name	Adamts3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487140 GeneID:330119 MGI:3045353
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADAM metallopeptidase with thrombospondin type 1 motif, 3 transcript_id : NM_001081401.1

name	EG665733 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253996 GeneID:665733 MGI:3643585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 ESTs, 9 Proteins product : predicted gene, EG665733 transcript_id : XM_979078.2

name	Cox18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348223 GeneID:231430 MGI:2448532
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COX18 cytochrome c oxidase assembly homolog (S. cerevisiae) transcript_id : NM_001033310.2

name	Ankrd17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40549394 GeneID:81702 MGI:1932101
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 17 transcript_id : NM_198010.2

name	Ankrd17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40549396 GeneID:81702 MGI:1932101
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat domain 17 transcript_id : NM_030886.2

name	Alb1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803359 GeneID:11657 MGI:87991
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : albumin 1 transcript_id : NM_009654.2

name	Afp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142356981 GeneID:11576 MGI:87951
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alpha fetoprotein transcript_id : NM_007423.3

name	Afm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125347463 GeneID:280662 MGI:2429409
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : afamin transcript_id : NM_145146.2

name	LOC622307 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253998 GeneID:622307
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : similar to LOC360919 protein transcript_id : XM_886735.3

name	Rassf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110431379 GeneID:73246 MGI:1920496
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ras association (RalGDS/AF-6) domain family 6 transcript_id : NM_028478.2

name	Cxcl5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114842397 GeneID:20311 MGI:1096868
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 5 transcript_id : NM_009141.2

name	Ppbp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802684 GeneID:57349 MGI:1888712
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pro-platelet basic protein transcript_id : NM_023785.2

name	Cxcl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357546 GeneID:56744 MGI:1888711
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 4 transcript_id : NM_019932.2

name	Gm1960 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368523 GeneID:330122 MGI:3037818
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1960, (NCBI) transcript_id : NM_203320.2

name	Cxcl15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113374148 GeneID:20309 MGI:1339941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chemokine (C-X-C motif) ligand 15 transcript_id : NM_011339.2

name	Slc4a4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:133922580 CCDS:CCDS19406.1 GeneID:54403 MGI:1927555
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence TAS] GO_function : GO:0015380 - anion exchanger activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0008510 - sodium:bicarbonate symporter activity [Evidence ISS]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0015701 - bicarbonate transport [Evidence ISS]; GO:0006811 - ion transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence TAS]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : pancreas sodium bicarbonate cotransporter product : solute carrier family 4 (anion exchanger), member 4 protein_id : NP_061230.2

name	Gc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51172612 CCDS:CCDS19407.1 GeneID:14473 MGI:95669
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence ISS] [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA]; GO:0005499 - vitamin D binding [Evidence IEA]; GO:0051183 - vitamin transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA]; GO:0042359 - vitamin D metabolism [Evidence IDA] codon_start : 1 note : vitamin D binding protein product : group specific component protein_id : NP_032122.1

name	Npffr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981539 CCDS:CCDS19408.1 GeneID:104443 MGI:1860130
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : neuropeptide NPFF receptor product : G protein-coupled receptor 74 protein_id : NP_573455.2

name	LOC631105 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254003 GeneID:631105
definition	codon_start : 1 product : similar to fimbriae-associated protein Fap1 isoform 1 protein_id : XP_909815.3

name	Adamts3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487141 GeneID:330119 MGI:3045353
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0017074 - procollagen N-endopeptidase activity [Evidence IGI] GO_process : GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]; GO:0051605 - proteolysis during protein maturation [Evidence IGI] codon_start : 1 product : a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3 protein_id : NP_001074870.1

name	EG665733 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253997 GeneID:665733 MGI:3643585
definition	codon_start : 1 product : similar to initiation factor 4D protein_id : XP_984172.2

name	Cox18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677488 CCDS:CCDS19411.1 GeneID:231430 MGI:2448532
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA] GO_process : GO:0051205 - protein insertion into membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : COX18 cytochrome c oxidase assembly homolog protein_id : NP_001028482.1

name	Ankrd17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40549395 GeneID:81702 MGI:1932101
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0007492 - endoderm development [Evidence TAS]; GO:0006298 - mismatch repair [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : isoform b is encoded by transcript variant 2; ankyrin repeat domain containing protein FOE; gene trap ankyrin repeat product : ankyrin repeat domain protein 17 isoform b protein_id : NP_932127.2

name	Ankrd17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40549397 GeneID:81702 MGI:1932101
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0007492 - endoderm development [Evidence TAS]; GO:0006298 - mismatch repair [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : isoform a is encoded by transcript variant 1; ankyrin repeat domain containing protein FOE; gene trap ankyrin repeat product : ankyrin repeat domain protein 17 isoform a protein_id : NP_112148.2

name	Alb1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859506 CCDS:CCDS19412.1 GeneID:11657 MGI:87991
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005576 - extracellular region [Evidence ISS]; GO:0043234 - protein complex [Evidence ISS] GO_function : GO:0016209 - antioxidant activity [Evidence ISS]; GO:0005386 - carrier activity [Evidence IEA]; GO:0005507 - copper ion binding [Evidence IEA] [Evidence ISS]; GO:0003677 - DNA binding [Evidence ISS]; GO:0008144 - drug binding [Evidence ISS]; GO:0005504 - fatty acid binding [Evidence ISS]; GO:0008289 - lipid binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0019825 - oxygen binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS]; GO:0030170 - pyridoxal phosphate binding [Evidence ISS]; GO:0015643 - toxin binding [Evidence ISS] GO_process : GO:0009267 - cellular response to starvation [Evidence ISS]; GO:0019836 - hemolysis of host red blood cells [Evidence ISS]; GO:0051659 - maintenance of mitochondrion localization [Evidence ISS]; GO:0043066 - negative regulation of apoptosis [Evidence ISS]; GO:0043072 - negative regulation of non-apoptotic programmed cell death [Evidence ISS]; GO:0006810 - transport [Evidence ISS] [Evidence IEA] codon_start : 1 exception : mismatches in translation note : serum albumin product : albumin 1 protein_id : NP_033784.1

name	Afp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982513 CCDS:CCDS19413.1 GeneID:11576 MGI:87951
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0004566 - beta-glucuronidase activity [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA]; GO:0005507 - copper ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016151 - nickel ion binding [Evidence IEA] GO_process : GO:0001542 - ovulation (sensu Mammalia) [Evidence IMP]; GO:0042448 - progesterone metabolism [Evidence IMP]; GO:0019953 - sexual reproduction [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : alpha-foetoprotein product : alpha fetoprotein protein_id : NP_031449.2

name	Afm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125347464 GeneID:280662 MGI:2429409
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : alpha albumin product : afamin protein_id : NP_660128.2

name	LOC622307 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253999 GeneID:622307
definition	codon_start : 1 product : similar to LOC360919 protein protein_id : XP_891828.3

name	Rassf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110431380 GeneID:73246 MGI:1920496
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : Ras association (RalGDS/AF-6) domain family 6 protein_id : NP_082754.2

name	Cxcl5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114842398 CCDS:CCDS19414.1 GeneID:20311 MGI:1096868
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : small inducible cytokine B subfamily, member 5; small inducible cytokine subfamily B, member 15; granulocyte chemotactic protein-2 product : chemokine (C-X-C motif) ligand 5 protein_id : NP_033167.2

name	Ppbp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963823 CCDS:CCDS19415.1 GeneID:57349 MGI:1888712
definition	codon_start : 1 note : platelet basic protein; chemokine (C-X-C motif) ligand 7 product : pro-platelet basic protein protein_id : NP_076274.1

name	Cxcl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910486 CCDS:CCDS19416.1 GeneID:56744 MGI:1888711
definition	GO_component : GO:0005576 - extracellular region [Evidence ISS]; GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0008201 - heparin binding [Evidence ISS] GO_process : GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence ISS]; GO:0030595 - leukocyte chemotaxis [Evidence ISS]; GO:0016525 - negative regulation of angiogenesis [Evidence ISS]; GO:0045653 - negative regulation of megakaryocyte differentiation [Evidence ISS]; GO:0030168 - platelet activation [Evidence ISS] codon_start : 1 note : platelet factor 4 product : chemokine (C-X-C motif) ligand 4 protein_id : NP_064316.1

name	Gm1960 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42600573 CCDS:CCDS19417.1 GeneID:330122 MGI:3037818
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0008009 - chemokine activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : dendritic cell inflammatory protein 1 product : gene model 1960 protein_id : NP_976065.1

name	Cxcl15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755436 CCDS:CCDS19418.1 GeneID:20309 MGI:1339941
definition	GO_component : GO:0005576 - extracellular region [Evidence IDA] GO_function : GO:0008009 - chemokine activity [Evidence IDA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006935 - chemotaxis [Evidence IDA]; GO:0030097 - hemopoiesis [Evidence IDA]; GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IDA]; GO:0030593 - neutrophil chemotaxis [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : chemokine (C-X-C motif) ligand 15 (MGD\|MGI:1339941 GB\|BC061138, evidence: BLASTN, 100%, match=954); putative; small inducible cytokine subfamily B, member 15 product : chemokine (C-X-C motif) ligand 15 protein_id : NP_035469.1

name	LOC100040105 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040105
definition	number : 1 pseudo : _no_value

name	LOC622870 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253995 GeneID:622870
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs, 2 Proteins product : similar to protein phosphatase 2A inhibitor-2 I-2PP2A pseudo : _no_value transcript_id : XR_031497.1

clone name	MSMg01-296F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335K10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-074L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291C14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-145F15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-276L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513P04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-213A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-175J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521H15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-277C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141I15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-290J21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-390E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533A20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-296B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148N15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180E22
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-534I24.T7 (MSMg01no534_i24.b1)	MSMg01-534I24.TJ (MSMg01no534_i24.g1)
ACC	AG602218	AG602219
length	495	765
length of high quality (start - end)	---	544 (66 - 609)
definition	CHROMAT_FILE: MSMg01no534_i24.b1 PHD_FILE: MSMg01no534_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:07 2005	CHROMAT_FILE: MSMg01no534_i24.g1 PHD_FILE: MSMg01no534_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:07 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NNAAGGGGGNNNNNNNCCCAAACACCCATTCAAAATCCCNAATCGGGTTT CCTCTCACTTACAATTCTGGAACTCTATTTCCCGCTTGTCTTCGGGAATC GGGATTGCTACANCCTAANCTCAATCCTTTATAAATACCTGAAAATCCTT CCNAAATTACAAAAGCAAAAATGGACAAACAAGGAAAACTTCCACCCTTC CATACGGACCCTTTTCCCACCAAAGGAANTTAATGCTTCATCACGCAAAA TACGCGTAAACCCCGGACCCCGGGGNNNNNNGCNGGGGTGGGGGGGGGGG GGGGGGGGGCTNNNNNNNNNNNNNNTGGCTGGGGGGANACAAAAANNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCNNCCCNCNNCC CCCCCCCCCCNNNNNCCCNNNNCCCCCCCCTATGGGGGGGGGGGG	TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXAAGGGCCAAGAAATGGGAGTGGGTGGGTAGGGGAC CAGGGAGGGGGGAAGGTATAGGGAACTTTTGGGATAGCATTTGAGATGTA AATAAAGAAAATATCTAATAAAAAAGTAAAAAATAAAATAAAATCACCTA GGAAACAACAACAACAACAACAACAAATAAGCAGAATATAGCCAACACCC CTGTGGCCTCCCTCCCGCCACCTTCCGATTCTTAGCCCTCAGTAAACATA GCCACACTCCTGATTTTATAACAGCGTTAGATTAATTTTGTCTGGCATTT CTTCTTTTTAGCAAACGAAATCACACAATATGATACTGTAGCATATGGCC CAGGATGCCAATTTTAAAAATATCTATATGACATGTCTTAGCCCACTAGA GTCGGAGAAGGATTCTATTTAGGTAGAGAGAAGGCAGTTTGTAGTGGAGG CAATGGCAGGTTAGAAGACATTAGGTTTCTCACCTGTGTAGTGTCTCACA GTTGATATGGCTTCTCTCTTAACCAGTGGGGAAAACACATTCTTGGTATG AGAGGAGGTTTGGCTCACTCTAGAGAAAATAGGGAAATAGATTTTGAACT CTGATCTCTTTTGGGACCTCTTTGGTAATAGAGAAACTACCTACTGCTTT GCCCAACTTGTGAATGTTGAAGTATATTTGTGGAGTTATGGCCATGTGTG ACTCATGAGCTCCTG
quality values	Open. Hide. 0 0 3 6 6 7 7 7 3 0 0 0 0 0 0 0 3 7 7 9 10 17 21 21 10 9 19 13 7 7 8 8 8 8 8 8 8 11 3 0 3 8 8 6 9 9 9 6 6 13 14 15 16 8 10 8 8 8 8 8 8 6 6 8 6 8 8 13 10 17 19 19 19 23 22 9 9 9 16 12 12 10 10 10 12 10 21 19 10 9 8 6 7 8 9 8 7 8 8 8 6 7 7 6 6 8 19 21 23 19 15 3 0 3 8 6 6 3 0 3 6 6 17 8 8 8 11 8 8 8 8 8 9 11 8 8 8 9 8 6 6 9 9 7 9 8 8 8 8 8 8 3 0 3 8 8 8 8 8 9 9 8 10 8 10 12 9 8 8 8 8 9 8 10 8 8 8 8 9 8 8 9 15 15 15 12 8 8 8 8 10 11 9 9 11 12 10 10 10 10 8 8 8 8 8 8 8 10 8 8 9 10 18 13 23 11 10 10 10 10 10 16 17 13 13 10 12 3 0 3 11 8 8 8 10 8 8 8 8 8 8 8 8 8 8 13 9 11 9 12 9 9 9 8 10 8 8 8 8 8 10 10 15 12 11 11 10 9 9 9 9 9 10 10 3 0 0 0 0 0 0 3 3 0 3 12 13 19 28 17 10 8 8 8 8 8 10 10 12 9 16 19 21 21 26 27 17 9 7 9 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 6 6 6 6 6 9 12 16 12 9 3 0 3 10 10 16 16 16 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 17 19 22 22 8 8 8 6 7 3 0 0 3 18 3 0 3 0 0 3 14 8 9 9 9 19 16 12 17 8 3 0 0 0 0 0 3 17 3 0 0 0 0 3 9 9 10 10 9 10 12 10 9 10 10 13 9 11 13 13 27 25 12 12 10 10	Open. Hide. 20 20 23 12 15 15 26 30 39 34 41 41 42 42 47 47 47 47 27 27 16 9 9 9 8 7 7 7 8 8 9 8 8 8 12 12 25 25 30 31 31 33 31 31 41 41 28 28 12 11 6 6 6 6 6 6 10 16 12 14 14 23 19 28 20 20 20 31 41 47 53 53 53 53 53 53 53 50 50 53 53 57 59 57 57 57 68 68 68 68 68 68 68 68 68 57 53 50 50 47 47 48 43 48 50 50 50 50 59 59 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 68 68 57 57 57 57 57 57 57 68 68 68 68 68 59 50 50 50 50 50 50 50 50 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 59 57 57 57 57 57 57 57 68 68 68 57 68 68 57 57 57 57 52 52 52 57 57 57 57 57 57 57 57 59 59 68 68 62 62 62 62 62 62 62 62 62 62 43 43 39 39 43 43 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 62 62 62 62 68 62 62 68 68 62 62 62 62 44 44 43 28 32 12 15 18 20 33 34 57 57 52 57 57 68 68 68 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 59 59 59 59 59 57 57 57 57 59 59 59 57 57 59 59 68 59 59 59 59 59 59 52 52 52 52 52 54 54 54 57 57 57 57 57 57 54 52 52 50 59 59 54 54 59 59 59 59 59 48 48 48 59 57 46 44 44 44 44 57 44 48 48 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 57 59 57 59 59 43 43 35 39 39 57 43 57 57 48 48 43 43 43 43 43 57 48 48 48 48 48 48 43 43 41 41 41 43 37 37 39 39 39 34 34 30 30 32 37 34 43 36 31 31 38 39 39 39 40 41 40 39 39 35 35 31 31 35 37 37 36 33 34 37 28 28 37 37 43 43 57 57 48 48 37 37 28 30 37 39 39 41 41 32 37 37 37 41 41 40 41 37 37 37 37 33 37 30 28 22 31 31 31 34 34 34 29 34 37 37 30 33 26 32 26 35 36 29 32 28 24 24 26 28 35 39 39 37 37 32 24 24 24 17 21 8 7 7 9 9 18 21 28 31 31 32 37 27 29 29 28 28 36 37 37 43 34 34 28 28 23 28 28 33 33 16 13 11 11 11 19 30 22 22 12 16 15 22 20 20 15 11 12 18 30 30 18 18 18 18 22 20 32 37 37 31 25 30 22 29 24 18 11 8 13 13 28 28 30 30 31 37 32 30 25 13 13 8 8 8 8 8 10 10 10 11 11 9 10 16 24 14 11 11 11 11 18 19 19 10 10 10 13 15 24 19 30 30 30 26 18 15 14 12 19 13 13 10 10 10 9 9 9 9 9 9 8 13 9 8 8 12 10 10 12 19 14 18 14 11 8 8 8 8 8 8 8 15 22 30 17 13 9 9 7 10 8 8 11 18 11 12 11 16 10 9 9 9 9 9 9 9 9 12 9 10 8 13 8 8 8 8 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no534_i24.g1 MSMg01no534_i24.g1 CHROMAT_FILE:
MSMg01no534_i24.g1 PHD_FILE: MSMg01no534_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:07 2005
         (544 letters)



>mm_chr5_90305631_90306574
          Length = 944

 Score =  791 bits (409), Expect = 0.0
 Identities = 420/425 (98%), Gaps = 4/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 121 aaataaaatcacctaggaaacaacaacaacaacaacaacaaataagcagaatatagccaa 180
           ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 944 aaataaaatcacctagga---aacaacaacaacaacaacaaataagcagaatatagccaa 888

                                                                       
Query: 181 cacccctgtggcctccctcccgccacctt-ccgattcttagccctcagtaaacatagcca 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 887 cacccctgtggcctccctcccgccaccttcccgattcttagccctcagtaaacatagcca 828

                                                                       
Query: 240 cactcctgattttataacagcgttagattaattttgtctggcatttcttctttttagcaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cactcctgattttataacagcgttagattaattttgtctggcatttcttctttttagcaa 768

                                                                       
Query: 300 acgaaatcacacaatatgatactgtagcatatggcccaggatgccaattttaaaaatatc 359
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 acaaaatcacacaatatgatactgtagcatatggcccaggatgccaattttaaaaatatc 708

                                                                       
Query: 360 tatatgacatgtcttagcccactagagtcggagaaggattctatttaggtagagagaagg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tatatgacatgtcttagcccactagagtcggagaaggattctatttaggtagagagaagg 648

                                                                       
Query: 420 cagtttgtagtggaggcaatggcaggttagaagacattaggtttctcacctgtgtagtgt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cagtttgtagtggaggcaatggcaggttagaagacattaggtttctcacctgtgtagtgt 588

                                                                       
Query: 480 ctcacagttgatatggcttctctcttaaccagtggggaaaacacattcttggtatgagag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctcacagttgatatggcttctctcttaaccagtggggaaaacacattcttggtatgagag 528

                
Query: 540 gaggt 544
           |||||
Sbjct: 527 gaggt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information