Query= MSMg01no534_j04.b1 MSMg01no534_j04.b1 CHROMAT_FILE:
MSMg01no534_j04.b1 PHD_FILE: MSMg01no534_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:08 2005
(189 letters)
>mm_chr5_40691868_40692459
Length = 592
Score = 339 bits (175), Expect = 9e-98
Identities = 183/187 (97%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 4 ggaattcatgcctctgaagccactagcaattttttt---gttttgtttttggtgtttttt 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 ggaattcatgcctctgaagccactagcaattttttttttgttttgtttttggtgtttttt 263
Query: 61 gtttggtttttgttaatgacaatactacaattgatgtggttcttagaaaatgcagagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtttggtttttgttaatgacaatactacaattgatgtggttcttagaaaatgcagagata 323
Query: 121 tgccaggtccttgaggcagggacagacttctagttggactgctcctgtgaagacaccata 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 tgccaggtccttgaggcagggacagacttctagttggtctgctcctgtgaagacaccata 383
Query: 181 tctcatc 187
|||||||
Sbjct: 384 tctcatc 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 592
Length adjustment: 8
Effective length of query: 181
Effective length of database: 584
Effective search space: 105704
Effective search space used: 105704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no534_j04.g1 MSMg01no534_j04.g1 CHROMAT_FILE:
MSMg01no534_j04.g1 PHD_FILE: MSMg01no534_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:08 2005
(632 letters)
>mm_chr5_40876253_40877281
Length = 1029
Score = 857 bits (443), Expect = 0.0
Identities = 548/587 (93%), Gaps = 10/587 (1%)
Strand = Plus / Minus
Query: 1 aaaacagactagattcaaaactcaggataactttgactgaggcctgacagccccaatgta 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 582 aaaacagactagattcaaaactcagaataactttgactgaggcctgacagccccaatgta 523
Query: 61 agagctggcagttcatgactttctggatttttacaggtttgtcacctctggtgttgcttt 120
||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 522 agagctggcagttcacgactttctggatttttacagttttgtca-ctctgatgttgcttt 464
Query: 121 ggaatagaaattactaaggtgtgtgtgtgtgtttatgtgtaagtgttagaagaccaattg 180
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct: 463 tgaatagaaattactaaggtgcatgtatgtgtttatgtgtatgtgttagaagaccaattg 404
Query: 181 cttctatctcctctttag--tttaacttgaattttttcaaactgatagatagcacactat 238
|||||||||||||||||| |||| ||| |||||||||||||||| |||||||||
Sbjct: 403 cttctatctcctctttagatttta----gaagattttcaaactgatagaaagcacactac 348
Query: 239 cagggacattcttttagattataatctgctttgcgatatggttctgggggtggccagcat 298
|||| |||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||
Sbjct: 347 caggaacattctttttgattataatccgctttgcaatatggttctgggggtggcaagcat 288
Query: 299 gggagataaaggttagagcttcagtgcatctcattacttgagtggacatagggtgtcatc 358
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 287 gggagacaaaggttagagcttcagtgcatctcattacttgagtggatatagggtgtcatc 228
Query: 359 aacagaacatggagtatggcatccatgacttttctctttccttagacaaaactgtttgaa 418
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aacagaacatggagtatggcaaccatgacttttctctttccttagacaaaactgtttgaa 168
Query: 419 taaaagcaactaagggaacaaggattcattttcattcactggggaagagggtccagtctt 478
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 167 taaaagcaactaagggaacaaggattcattttcattcactggcgaagagggtccagtctt 108
Query: 479 ---tcatggcaggaaatgtgtggtgaaattagtggtagcagaaccatgtagctgatgtgc 535
|||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 107 ctttcatggcaggaagtgtgtggtgaagttagtggtagcagaactatgcagctgatgtgc 48
Query: 536 ctcaaatcttagaagaaaaggaaccagggagagagaatgcaggtact 582
|||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 47 ctcaaatcttggaagaaggggaaccagggagagagaatgcaggtact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1029
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1019
Effective search space: 633818
Effective search space used: 633818
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
