BAC Information

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BAC

Clone NameMSMg01-535E03
Chromosome5 (Build37)
Map Location 15,401,006 - 15,401,661
singlet/doubletsinglet
Overlap genenone
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik
Downstream geneLOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535E03.T7 (MSMg01no535_e03.b1)MSMg01-535E03.TJ (MSMg01no535_e03.g1)
ACCAG602749AG602750
length766774
length of high quality
(start - end)		660 (47 - 706)574 (74 - 647)
definitionCHROMAT_FILE: MSMg01no535_e03.b1 PHD_FILE: MSMg01no535_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:01 2005CHROMAT_FILE: MSMg01no535_e03.g1 PHD_FILE: MSMg01no535_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCATCTAGTTCGGATCACTCAGTTTCCTTCTGATTAGACAAGCT
CCATCTTTCTGCCTTCTTTGGTCAATATCAATTTAAATATTCACAGCACA
ATAGAGGGAGACTCTGATTTGTGTTGAGAGTAGATGGAATTGAAATACCA
CTATAGCTCAGCCTTTTGCTTCCACACCCTCAGCCTCTCTACCTTCTTGG
GTCTCCCATTCTTCCCTACCTATGTTGCCCAAAGCTGAATATCACTGCTG
ACCTTCATTTTCCCAGAGCACAGCTTAAAGTATTTTTGATGCTTATAAGA
ATCCTCAATTTTGTTGATATTGATTGGCAATTAAAACTGGTGTTGTGACG
AGCACATAGAAGCACAAAACATCAACTTTGAAGGCTAGATTTTGTCATTT
CTGGATATCTAATTAAGCAAGACCCACAGTGGAATGTCTCTGTGGTCAGC
AGTGTCTGTACACACATACTTTCCCTGTGTGTGCCTGAGGCTTGTTCTCC
TTTCTCCTAGCAACTCCATTTCCTCTGTTTCAAAGCTGCTGACTCTTTAC
CCTCAGTCCCTTGAGGTATAATTAAACAATTCTTCTTGCTTTCTTGAGCA
GAGAAACAGCTCATTCTTTACTTGCTCCATTCCTTCCCAAAATAGTATTC
GTGTTCCCAACTTTAAAGGCTGAAAGCATTCTTTCCTTTAACCAGCAAAT
GGAAATATTCTTCAAT

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGTCTGCAGCAGGGGACAGAACACC
TGAATAAGGAAGATGGTCTCAAGAGTCACTACTTGCAAATCAATTTTTAT
TCATAAGAAATAGAATTTTTAAAAAGTAGGTTTTAAAAGTTCAATTAATA
TAGAGATAAAGGCAAAAACAAACAATGAAATACAAGAACAAGAACATATA
ACTTCTAAATAACATAACAATAACTCTAAGAACAAAAATAAAAACTTAAA
CCAAAACTCTAAAGGAAAATTATTGTTCAGCTGCTTTCGCTTTCTGCACT
TTTAGCAGCACAGCCCTCCAGCCTGCTGCTCCTCTTGGACACTAGGTATC
AGTGCAGCCGCCTCAGTTCTCTGCCAAGAGACGTTGTCTGAAGAGAAAAG
GGAACAACGCCCTGAATCAGCCATGGCTTCCTAGTAAAGGCCGATTCACC
CTAAGAAAATGAATTATATGGAAGAAGATTCATCCAAGGAAGATTGTGGG
TGCTGGAGATGGTGCTCAGCAGGGGCCTCCTGGCCTGGCAACTCATTCTG
CAGGATGCTGTCTTCTTCAGCTGTGGCCAATCCCAGCTCTCTTGCAGTTT
CTGAGACCTGGGAGAGGAAAGCAGTTACTAAGACACAGGAGTGGAGGAGA
AATGGCATGGCAGCTGTGAGGCTACTGCCTCCCTACACCTTCACTGTACT
TGACAGTCAACATTAATATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_e03.b1 MSMg01no535_e03.b1 CHROMAT_FILE:
MSMg01no535_e03.b1 PHD_FILE: MSMg01no535_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:01 2005
         (660 letters)



>mm_chr5_15400802_15401861
          Length = 1060

 Score = 1222 bits (632), Expect = 0.0
 Identities = 650/656 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatctagttcggatcactcagtttccttctgattagacaagctccatctttct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gaattctcatctagatcggatcactcagtttccttctgattagacaagctccatctttct 801

                                                                       
Query: 65  gccttctttggtcaatatcaatttaaatattcacagcacaatagagggagactctgattt 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 800 gccttctttggtcaatatcaatttaaatattcacagcacaatagagggggactctgattt 741

                                                                       
Query: 125 gtgttgagagtagatggaattgaaataccactatagctcagccttttgcttccacaccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtgttgagagtagatggaattgaaataccactatagctcagccttttgcttccacaccct 681

                                                                       
Query: 185 cagcctctctaccttcttgggtctcccattcttccctacctatgttgcccaaagctgaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cagcctctctaccttcttgggtctcccattcttccctacctatgttgcccaaagctgaat 621

                                                                       
Query: 245 atcactgctgaccttcattttcccagagcacagcttaaagtatttttgatgcttataaga 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 620 atcactgctgaccttcattttcccagagcacagcttaaagtattttagatgcttataaga 561

                                                                       
Query: 305 atcctcaattttgttgatattgattggcaattaaaactggtgttgtgacgagcacataga 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 atcctcaattttgttgatattgattggcaattagaactggtgttgtgacgagcacataga 501

                                                                       
Query: 365 agcacaaaacatcaactttgaaggctagattttgtcatttctggatatctaattaagcaa 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 agcacaaaacatcaactttgaaggctagattttgtcatatctggatatctaattaagcaa 441

                                                                       
Query: 425 gacccacagtggaatgtctctgtggtcagcagtgtctgtacacacatactttccctgtgt 484
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 440 gacccacagtggaatgtctctgtggtcagcagtgtctgtacacacagactttccctgtgt 381

                                                                       
Query: 485 gtgcctgaggcttgttctcctttctcctagcaactccatttcctctgtttcaaagctgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgcctgaggcttgttctcctttctcctagcaactccatttcctctgtttcaaagctgct 321

                                                                       
Query: 545 gactctttaccctcagtcccttgaggtataattaaacaattcttcttgctttcttgagca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gactctttaccctcagtcccttgaggtataattaaacaattcttcttgctttcttgagca 261

                                                                   
Query: 605 gagaaacagctcattctttacttgctccattccttcccaaaatagtattcgtgttc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagaaacagctcattctttacttgctccattccttcccaaaatagtattcgtgttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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