CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATCCTCGTCCTCCTGTGTTGGATTTAACCGTGCAGCTTTCCGCACTGC
CTCCCCAAGGTCGACTTGTCATCTATAGAACTTTTTTTTGGTTTGACTAC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCTCTCTCCCTTGCATGCGAGCGCTTCGCGCGAACTG
GCCACCAAGCATGCCATACCTGTTCTGGCGTATGACTCTTCCCCTCTCTG
CAAGATAAACTGTCCGCCGTGCGAAACTCTCCGCGCATATGTTCTACCCG
CCCATAGCCGACTCCTATGGATCTGTGTTGTGGATCCTCCCATCTCGATG
AGGACGAACTCTCCCCCAATTTCCCCGCGCATGACTAGGGCCAAGAGATT
CTCCTCAGATGTCTGTCACTGCCCCCTGCTTTGGCTTCCTGATGGATTAC
GGTTCAGATGGTATGGTGATCTCCATGTCCGATGAAGGACCCCCCTCATC
TGTGACTGATTACACCTCTCCATGCCATAGCTAATGATGTXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCGTAT

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGGATTTCAAAACTAATTTTAATGGG
TCTTTGGGTTTATTTTTGTAAAAATCAATGTGTTGGGAAGCATTGGCATC
TGTCACCTCTGATCCAAGCTCTTCTGAGATGCTCTTGTTGTGTACTTTCG
AGGACTGGTTGTTGAGAGTCTCACTCTCTTGGGTGACTATAGAAAGACTT
CTCCTTTAGTGTTAGGTGAGCAAGCCTTTTCATATCGCCCTTAGGAGTAT
TTGGAGTTTCATCGTCAATCAAAAAAGTGTCTACATCAGACAATGTGGTC
AAGTTTTCAGACAACTGGAAGGTGTTAGGGTGAGAGAAGAAGCTTCCAGC
TTGCTGTACAGATTTCATTAGCCACTCCTCGTGTGTACTCATAAGATCTG
CCTCTCTACTCCACCCATCAGCTTATCAATTATTTTTTTAATGGGGGCAT
ATGACTGGTGTAATGGCTAGTTTTGTGTCAACTTGACACAAGCTGAAGTT
ATCACAGACAAAGGAGCTTCAGGTGGGGAAGTGCCTCCATGAGATCTGAC
TGTAAAGCATTTTCTCAATTAGTGATCAAAGGGGGAGGGCTGCTTGTGGA
TGGTACTATCTCTGCACTGGTAGTCTAGGGTTCCATAAGAAAGCGAGGTG
AGCAGGCCAGGGGAAGCAAGCCTCTAAGTAACATCCCTCCATGACCTCTG
CGTCAGCTCCTGCTTTCTAACCTGCTTG

Query= MSMg01no535_n05.g1 MSMg01no535_n05.g1 CHROMAT_FILE:
MSMg01no535_n05.g1 PHD_FILE: MSMg01no535_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:45 2005
         (691 letters)



>mm_chr5_52150730_52151819
          Length = 1090

 Score = 1176 bits (608), Expect = 0.0
 Identities = 629/636 (98%), Gaps = 1/636 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggatttcaaaactaattttaatgggtctttgggtttatttttgtaaaaatcaatgtg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 635 agtggatttcaaaactaattttaatgggtctttgggtttatttttgtaaaaatcaatgcg 576

                                                                       
Query: 61  ttgggaagcattggcatctgtcacctctgatccaagctcttctgagatgctcttgttgtg 120
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctgggaaacattggcatctgtcacctctgatccaagctcttctgagatgctcttgttgtg 516

                                                                       
Query: 121 tactttcgaggactggttgttgagagtctcactctcttgggtgactatagaaagacttct 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tac-ttcgaggactggttgttgagagtctcactctcttgggtgactatagaaagacttct 457

                                                                       
Query: 181 cctttagtgttaggtgagcaagccttttcatatcgcccttaggagtatttggagtttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cctttagtgttaggtgagcaagccttttcatatcgcccttaggagtatttggagtttcat 397

                                                                       
Query: 241 cgtcaatcaaaaaagtgtctacatcagacaatgtggtcaagttttcagacaactggaagg 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 396 cgtcaatcaaaaaagtgtctacatcagacaatgtggccaagttttcagacaactggaagg 337

                                                                       
Query: 301 tgttagggtgagagaagaagcttccagcttgctgtacagatttcattagccactcctcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgttagggtgagagaagaagcttccagcttgctgtacagatttcattagccactcctcgt 277

                                                                       
Query: 361 gtgtactcataagatctgcctctctactccacccatcagcttatcaattatttttttaat 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 276 gtgtactcataagatctgcctctctactccacccatcagcttatcagttatttttttaat 217

                                                                       
Query: 421 gggggcatatgactggtgtaatggctagttttgtgtcaacttgacacaagctgaagttat 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 216 gggggcatatgactggtgtaatggctggttttgtgtcaacttgacacaagctgaagttat 157

                                                                       
Query: 481 cacagacaaaggagcttcaggtggggaagtgcctccatgagatctgactgtaaagcattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cacagacaaaggagcttcaggtggggaagtgcctccatgagatctgactgtaaagcattt 97

                                                                       
Query: 541 tctcaattagtgatcaaagggggagggctgcttgtggatggtactatctctgcactggta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tctcaattagtgatcaaagggggagggctgcttgtggatggtactatctctgcactggta 37

                                               
Query: 601 gtctagggttccataagaaagcgaggtgagcaggcc 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gtctagggttccataagaaagcgaggtgagcaggcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1090
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1080
Effective search space:   735480
Effective search space used:   735480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)