Query= MSMg01no536_h04.b1 MSMg01no536_h04.b1 CHROMAT_FILE:
MSMg01no536_h04.b1 PHD_FILE: MSMg01no536_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:33 2005
(569 letters)
>mm_chr5_93498876_93499844
Length = 969
Score = 1085 bits (561), Expect = 0.0
Identities = 564/565 (99%)
Strand = Plus / Plus
Query: 5 gaattctgcattctttaattcagggttagtggtgtgatagcagatgacactctgctccat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcattctttaattcagggttagtggtgtgatagcagatgacactctgctccat 264
Query: 65 agcccctcagcctttttcagctgtgagagacagcttatgtataatgcttactaggttata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcccctcagcctttttcagctgtgagagacagcttatgtataatgcttactaggttata 324
Query: 125 tgtaataacaggaagggtgaaaggaaaggaggagggagagagagagagagaaataaaaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtaataacaggaagggtgaaaggaaaggaggagggagagagagagagagaaataaaaga 384
Query: 185 agacactgagaccagtgagtgtagtatttaacagccataaaatgatgagatacatttcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agacactgagaccagtgagtgtagtatttaacagccataaaatgatgagatacatttcag 444
Query: 245 tgttctcatgccatggatgtttttcctccacaaaacagaggaatggtttatatcctgtat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttctcatgccatggatgtttttcctccacaaaacagaggaatggtttatatcctgtat 504
Query: 305 gcacaaacattcctgttgctcaataaagagttaaatactgtcttagagataggtcaatga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 gcacaaacattcctgttgctcaataaagagttaaatactgtcttagagataggtcgatga 564
Query: 365 tataaacatggaatttacaaaggaaagtgggactggggagatggcttagtggataaagca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tataaacatggaatttacaaaggaaagtgggactggggagatggcttagtggataaagca 624
Query: 425 caagtgtgaggaccagggtataaatccccagagcccatttaaaagtaggtatgtatggtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caagtgtgaggaccagggtataaatccccagagcccatttaaaagtaggtatgtatggtg 684
Query: 485 gccactgaagtcctggtacttgagagtcagagtctcaagaacaagctgccaagttagact 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gccactgaagtcctggtacttgagagtcagagtctcaagaacaagctgccaagttagact 744
Query: 545 agctggaactgttgagctctggatt 569
|||||||||||||||||||||||||
Sbjct: 745 agctggaactgttgagctctggatt 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_h04.g1 MSMg01no536_h04.g1 CHROMAT_FILE:
MSMg01no536_h04.g1 PHD_FILE: MSMg01no536_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:33 2005
(520 letters)
>mm_chr5_93640793_93641712
Length = 920
Score = 886 bits (458), Expect = 0.0
Identities = 487/500 (97%), Gaps = 7/500 (1%)
Strand = Plus / Minus
Query: 21 tggctcatgcctttaatcccagcaatcgggaggcagaggcaggcagatctctgagttcga 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tggctcatgcctttaatcccagcaatcgggaggcagaggcaggcagatctctgagttcga 861
Query: 81 ggccagcctggtctccagagtgagttctaggacagccagggctacacagagaaaccctgt 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ggccagcctggtctccagagtgagttctaggacagccagggctacacagagaaaccctgt 801
Query: 141 ctcaaaacaaaacaaaacaaaacaaaacaaaacaaaaaactgagagagagaaagagagag 200
|| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 800 ct-----caaaacaaaacaaaacaaaacaaaacaaaaaactgagagagagagagaaagag 746
Query: 201 acagacagagagagagagagagagagatccttatgtttttaaattgatgtttccttcctc 260
| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agagac--agatagagagatagagagatccttatgtttttaaattgatgtttccttcctc 688
Query: 261 ctgaggtcatggttgttggtttgggaaagttactcttgcattcagtctctgcagagatgg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctgaggtcatggttgttggtttgggaaagttactcttgcattcagtctctgcagagatgg 628
Query: 321 gtgagagcagcaggtagattctagagacacgtgattatttataatggtgtgcagattgct 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtgagagcagcaggtagattctagagacacgtgattatttataatggtgtgcagattgct 568
Query: 381 cctgttctcaccctcttctacaagacagtgccttcataaattgctgcatgaaagcttcat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 cctgttctcaccctcttctacaagacagtgccttcataaattgctgcatgaaaacttcat 508
Query: 441 ctaaagagctcatttaagacaaaggagacaggcaattctactcactcaatatcaataggc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctaaagagctcatttaagacaaaggagacaggcaattctactcactcaatatcaataggc 448
Query: 501 caacactatggaaatcagtg 520
||||||||||||||||||||
Sbjct: 447 caacactatggaaatcagtg 428
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
