NNNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTAAACAGATCAATAGAAAGTTTCAAATGAATAGGAC
TCTAGAAGTAATCAATGGCGGCTGAGTAAAAGATGCAGCAGGCTCTGGGA
CAACAGAGACCATTATCTCTGAACAGATTACCCATTCAAGGAAGGCAGAA
AAACAAGGCTGAGACCGTTGTCAAGTTGACTGGAATCCCCTCCTCTCCTG
CATTTGTGCCTCTGTTCACGAAAGGTGACTTGCTTTCTAGGCTCTCTCTC
GACATTCACTGAAGATATATAAGGTAAAAATTGTTGGCTCTTGGAGAGCT
GTACCATATTATCTATAATATTCACACATGATCACAAGGACTAATGGTCC
CATTAGAAGGAGTCATCTGACCACTTAGTGGAGTGGGTAGAGGTGAGTGG
GGCTATCACATGCAACTCAAATGTGAACAGGTTTCATGGTCAGAGATTCC
TAGGAATAATCATTATGAAAGCATTCTTCTTTGAGTTCCTAAATGCTGAA
TGTAACCACTCACTGACTAATCTCTGTTAGTTTATTCAAATGTATTTTCT
CCTTCTTGTTCCTCTGGGATGTCTATTTCCCAGCTCTGGGCCTTCCAGGT
CACTTGGAGGCCTGTTGGCAGGTCCCTCTTGACAGGAGAAGAGTAAGTGT
CCTCCCGAGAAGCATCAGATTCCAGCCGGAAGGGCTCTCCCTGGTGGTTC
CCATTCCAGTCAGTACAGCAGCATTA

NNNNNCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACACCCAAAAGCCCCTT
ACCCCATAAAAAACCCTAGCTTTTGAGCCTCGTGGCTGACATCCATTATC
TCCTGTGTGGGATGCATGTCAGTCCGGAGCTCTGTCATTAAACTACTTCA
TGTAATTACATCAAGATGGTCCTTCATGATTTTTTGGGTGCACGCCGAAT
CAGGAATTGAGTGGGGGTTTCCCCACTAGGTTCTATCATTAGTTTGAGGC
CAAGCAGAGCCATTTAGTTAGAAGCTGAGAGAAGCAAATTTGAATCAGTC
ATCTTGGAGAGTAGTAGGAACCTCTGTGGAAGTCACAGTGGCAGGTGATC
TCAACTGGTCATCATTGGAAAGAGAGGCCCATTGGACACTCAAACTTTAT
ATGCCTCAGTACAGGGGAACGCCAGGGTCAAAAAGAGGGAATGGGTGGGT
AAGGGGAAGTAGGGGNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNN
NNNNNNNNNNNNNNNNNNTNNNTTTTNNNTTTTTTNTTNTTTNTTTTTTT
TTNNNNNTTTNNTTTTTTTTTNTTTTNTTTTNTNNNNTTTTTTTTTTTTT
TTNNNTTTTTTTTTTTTTTTTATTTNANNTTTTAGTATTGTTTNGTTTA

Query= MSMg01no536_h19.b1 MSMg01no536_h19.b1 CHROMAT_FILE:
MSMg01no536_h19.b1 PHD_FILE: MSMg01no536_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:36 2005
         (499 letters)



>mm_chr5_49840819_49841717
          Length = 899

 Score =  926 bits (479), Expect = 0.0
 Identities = 491/495 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtaaacagatcaatagaaagtttcaaatgaataggactctagaagtaatcaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtaaacagatcaatagaaagtttcaaatgaataggactctagaagtaatcaat 264

                                                                       
Query: 65  ggcggctgagtaaaagatgcagcaggctctgggacaacagagaccattatctctgaacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcggctgagtaaaagatgcagcaggctctgggacaacagagaccattatctctgaacag 324

                                                                       
Query: 125 attacccattcaaggaaggcagaaaaacaaggctgagaccgttgtcaagttgactggaat 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 attacccattcaaggaaggcagaaaaccaaggctgagaccgttgtcaagttgactggaat 384

                                                                       
Query: 185 cccctcctctcctgcatttgtgcctctgttcacgaaaggtgacttgctttctaggctctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccctcctctcctgcatttgtgcctctgttcacgaaaggtgacttgctttctaggctctc 444

                                                                       
Query: 245 tctcgacattcactgaagatatataaggtaaaaattgttggctcttggagagctgtacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcgacattcactgaagatatataaggtaaaaattgttggctcttggagagctgtacca 504

                                                                       
Query: 305 tattatctataatattcacacatgatcacaaggactaatggtcccattagaaggagtcat 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tattatctataatattcacacatgagcacaaggactaatggtcccattagaaggagtcat 564

                                                                       
Query: 365 ctgaccacttagtggagtgggtagaggtgagtggggctatcacatgcaactcaaatgtga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgaccacttagtggagtgggtagaggtgagtggggctatcacatgcaactcaaatgtga 624

                                                                       
Query: 425 acaggtttcatggtcagagattcctaggaataatcattatgaaagcattcttctttgagt 484
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 acaggtttcatggtcagagcttcctaggaataatcattatgacagcattcttctttgagt 684

                          
Query: 485 tcctaaatgctgaat 499
           |||||||||||||||
Sbjct: 685 tcctaaatgctgaat 699


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)