BAC Information

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BAC

Clone NameMSMg01-536L19
Chromosome5 (Build37)
Map Location 138,748,855 - 138,749,443
singlet/doubletsinglet
Overlap geneStag3
Upstream geneTrip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2
Downstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536L19.T7 (MSMg01no536_l19.b1)MSMg01-536L19.TJ (MSMg01no536_l19.g1)
ACCAG603877AG603878
length795806
length of high quality
(start - end)		593 (47 - 639)538 (78 - 615)
definitionCHROMAT_FILE: MSMg01no536_l19.b1 PHD_FILE: MSMg01no536_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:56 2005CHROMAT_FILE: MSMg01no536_l19.g1 PHD_FILE: MSMg01no536_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACTTTACCTATTTTTTATTTTTTTAACTTGTGCATTTCATGTT
ATGTCTTAAGGAACCATTCACTGGTCCAGGTTCACAAAGATTTACGTATG
GCTACAGCCTCTCATGTCTATATTCCTTCATATAGGTTAATGGCAGCAAA
TTTTGGGTTTGTTTCTCTGTAGATACATGGTCACAGAGAAGGAAGGGTCA
GTAGAGGTGTAAATGTCCACTACTGGCAAATGGTGATGTATATTTGGCTG
CAGTTTTAAAATCACATTACCTGAGTTTTCTCAGGGAAAGAGCTTTAGGT
GTGGACACTTCAGTTGGTGGCATCATCCTTCTTTTCTCTCTAGTTAGCAG
AGAAAGTACCTGTACTCAGCTTGTCTGGTAAGAAGACACTAGAGTTGCCA
TCCTTTTATCTTCTGACTTCAGAAAACCGTGTCTCCCTGGCCCATATGCA
TCTGTTCCAGTCTCTGGTCCAAAACTAGTTACCATCAATCTAGAATGGAT
AGGATTTCATAATTCATTGCCTAACAGACTGCTTAATTTTGGGTAATCAG
TCATCTCCCACATTTGTCATCAAATATTTATGTTCTCTGTGAAGNGNATT
GTTTCTATATTGTTTCCTAAGTAGGTAGTATTTTCTACGATANGAGCTGT
ATATAATGATATAGCATCGCACTGTAGCACCCAGGTACATTATTATGTAT
GGTTCTGCTCATTCTTGAGATGGGACAAATAAAGCTACTTAATTT

NCCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGCCCAAGACTCTGCCTTTT
GTTGGGACAATACATTTCTACAGGAGGGTGAGTTATGTTGAGTTTCCTAC
TTTGTCTCTGTAACTTATTTTTATGGATGTCAAGAAACTTTGTGTCAGTT
CACCAGTGCAAGTAGCCATTGATCCCAATGCTAAAGTTTTCAACTTTTAT
AATTATTTGTGCCACAGCAACATCATTGCCAGATTATCCCTGTTTATTGA
CATGAGTTTGTGACCTCAGGTCTTTGTCAGGTCAAGCAAGCACTCTGGAT
GTTGACACAGTAAGGCCTGATGCGAAAATGCTGATGTGTAAACTGTGGGA
GCGTTAAAGATTTAGGTTTCTTTTTCAGTACAGAAAAGTGCAATTATTCC
TAATCAGTATTTAGAGAATCACATGTAAGTCCACTGAGTGGCACCACACC
ACTTTGAGTTGGAGTTCAGTAACAATATTTTCTCTCCTTGTTGGGTAGCT
CTGGCACATGGCTATCAAGAGCCATGTTGTTTCTTTTGAGAAATTTGCAT
ACACTGGCATCCTCAACTGAGCTGTTTAACCCTGTTATTATTTCCAAGAC
TACAGCCAAGGCTTTGCCACCTATACGAAGATTTGGCTTTACTCTTTTTC
AATTCAAANAAGNACCTGTGTATGACTCTAANGAATATGNCAGAGANATA
ATTCCTATGAACTTCAGATGTTTAACATATCGTGACTTCCCTTTCTTGAA
CAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_l19.b1 MSMg01no536_l19.b1 CHROMAT_FILE:
MSMg01no536_l19.b1 PHD_FILE: MSMg01no536_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:56 2005
         (593 letters)



>mm_chr5_138748651_138749643
          Length = 993

 Score = 1123 bits (581), Expect = 0.0
 Identities = 587/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactttacctattttttatttttttaacttgtgcatttcatgttatgtcttaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactttacctattttttatttttttaacttgtgcatttcatgttatgtcttaag 264

                                                                       
Query: 65  gaaccattcactggtccaggttcacaaagatttacgtatggctacagcctctcatgtcta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaccattcactggtccaggttcacaaagatttacgtatggctacagcctctcatgtcta 324

                                                                       
Query: 125 tattccttcatataggttaatggcagcaaattttgggtttgtttctctgtagatacatgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattccttcatataggttaatggcagcaaattttgggtttgtttctctgtagatacatgg 384

                                                                       
Query: 185 tcacagagaaggaagggtcagtagaggtgtaaatgtccactactggcaaatggtgatgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcacagagaaggaagggtcagtagaggtgtaaatgtccactactggcaaatggtgatgta 444

                                                                       
Query: 245 tatttggctgcagttttaaaatcacattacctgagttttctcagggaaagagctttaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatttggctgcagttttaaaatcacattacctgagttttctcagggaaagagctttaggt 504

                                                                       
Query: 305 gtggacacttcagttggtggcatcatccttcttttctctctagttagcagagaaagtacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtggacacttcagttggtggcatcatccttcttttctctctagttagcagagaaagtacc 564

                                                                       
Query: 365 tgtactcagcttgtctggtaagaagacactagagttgccatccttttatcttctgacttc 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtactcagcttctctggtaagaagacactagagttgccatccttttatcttctgacttc 624

                                                                       
Query: 425 agaaaaccgtgtctccctggcccatatgcatctgttccagtctctggtccaaaactagtt 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaaaaccgtgtctccctggcccttatgcatctgttccagtctctggtccaaaactagtt 684

                                                                       
Query: 485 accatcaatctagaatggataggatttcataattcattgcctaacagactgcttaatttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accatcaatctagaatggataggatttcataattcattgcctaacagactgcttaatttt 744

                                                            
Query: 545 gggtaatcagtcatctcccacatttgtcatcaaatatttatgttctctg 593
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gggtaatcagtcatctcccacatttgtcatcaaatatttatgttctctg 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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