BAC Information

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BAC

Clone NameMSMg01-536O19
Chromosome5 (Build37)
Map Location 46,644,636 - 46,644,758
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536O19.T7 (MSMg01no536_o19.b1)MSMg01-536O19.TJ (MSMg01no536_o19.g1)
ACCAG604018AG604019
length801813
length of high quality
(start - end)
---123 (157 - 279)
definitionCHROMAT_FILE: MSMg01no536_o19.b1 PHD_FILE: MSMg01no536_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:10 2005CHROMAT_FILE: MSMg01no536_o19.g1 PHD_FILE: MSMg01no536_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCCCTTCCTTTGCGGAGGGAAAAAGAAAAAGGAATTTCAAAAAAAG
GGGGGAANNNTANGTTGTACCCAAAAAAGGAGGNAAGTAGACGGCTCCCG
CTCAATAAGCATTCATCCAGAATTGATGACCACCAGCAGTGTAGACTGTT
ATAGAAATAGAAATAGACGATGCATCATTCACCCCCAGGCTTTTAGAAAT
AAGGCACCAAAAAGCCTTATGGTTATAAAAAAAAATGTGCAGCCCAGGTT
GGTTTTAAACTCAAGAGCCGCCTGTCTCTGCCTCTTTCATGCATATCCTA
CCAGTATTTCCCATCACATCTGACTTGATGTTCTCTTTTGGGCCGGTACT
CATAGAATTGGACGGTATAGTTGAGGGAGGGTCATATGATGGCGGGACTG
GCCCCAAAGGATAGTGAATCCTCGTTTGTAATGTCCAGTGAACAAATTTA
ATTAACTCTTTTGGTTTTAATAAAGCTAACCTTTGACATCGGGTCATCAT
GAAGGCGTAAGAACGTCGTTTTTTTTCCTCACTTGAGGGTATTCCCCACA
ACATGAATTTTTTCCCTTCTTCATTAACCATCCCTTTCCTTTTGCTTCCT
CCAAAACACCTCCTTTCCACAGTTTTTTTACACCTTTTCTCTCTTTTTGC
ACCACTCCCTCGGTTTCCCTTTTTTCCCGTTACCTTTTTCCTCCCATATT
GTGTTCTTTACCCGAATAATTTCCGTCTGTCCTTCTTTTCCCCTTATCTT
TCCCTGCTATTTACCCATTTTTTTCTCCCAAATTTCCTCTGTCCGCCTTC
C
TCTATACTATACATTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTATTTAATTAAATACCC
TCATATTCAGAGGAATAACTCCTCAAATAATTTTATACAACTAGCATATC
AATAATTAAAATGAGGCTAAATATAATTGTATCTCTTTGGCGATTCACTG
TGATTTTGCTTCATTTATGGGTTGAACTTAGAAATATCTCGTGATAGAAG
ACCAATTAATGAAATTGATGTGATGCAGAGGATGTGTAAAGGGGTCTTAT
AAATAGCTTTGAGACTTCATATTTCAAAAACATGCTGCCATCTCCTTCCT
TGACAGTTATGTGGCAGGCTGGGGCTATAAAAACAAACTAAGCTTGTTGT
CGGTTGGATATATGCTTATCAGAGTACGTGAAATAAATACCAAATAATAC
CCAAAATGTTGTTGATACCATTATACACAAATGTAGATAGACAACTATGC
GAAAAATTAATATCTTAATCCAGCTCCCTCGGGACTTTATGGAAAGTCTA
ATTCATCTTCTTTAACTCTGACCGTGTTAAACACCATTATAACCCTGTTC
AAAACCTCATAGATTTCTCCCCCAGAAAAATTAAAATGTTTGCCTGCATT
CCAAAAACTAGCCTTCCCCCTCCGCATTAAACTNTAGGATTGATGAAATC
ACACAATTCCCCGCCTTAATTACCCCTTCCCCAAATGCACTATTCTTCCC
CCACTCTTCTATGGTAAACCTCCTATTCTCACTGGAAATCCATCTTAACG
ACTTTTACTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_o19.g1 MSMg01no536_o19.g1 CHROMAT_FILE:
MSMg01no536_o19.g1 PHD_FILE: MSMg01no536_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:10 2005
         (123 letters)



>mm_chr5_46644436_46644958
          Length = 523

 Score =  215 bits (111), Expect = 9e-61
 Identities = 120/123 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaatgaggctaaatataattgtatctctttggcgattcactgtgattttgcttcattt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 323 taaaatgaggctaaatataattgtatctctttggtgattcactgtgattttgcttcattt 264

                                                                       
Query: 61  atgggttgaacttagaaatatctcgtgatagaagaccaattaatgaaattgatgtgatgc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 263 atgggttgaacttagaaatatctcgtgatagaaggccaattaatgaaattgatgtaatgc 204

              
Query: 121 aga 123
           |||
Sbjct: 203 aga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)