BAC Information

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BAC

Clone NameMSMg01-537C18
Chromosome5 (Build37)
Map Location 55,755,850 - 55,756,579
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537C18.T7 (MSMg01no537_c18.b1)MSMg01-537C18.TJ (MSMg01no537_c18.g1)
ACCAG604206AG604207
length749747
length of high quality
(start - end)		690 (51 - 740)644 (80 - 723)
definitionCHROMAT_FILE: MSMg01no537_c18.b1 PHD_FILE: MSMg01no537_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:28 2005CHROMAT_FILE: MSMg01no537_c18.g1 PHD_FILE: MSMg01no537_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGTATAAAAAAATCACTTGCTTATTAAATCTGGAATTA
TAGCAACCTATAAACACTGATTTAAATAAGAGTGAAATTTATTTTTCTAC
AGGTAATATCAATTTAGTAAATATGTAATCTCAAAAAAACTTGATTTCAG
AAAATTTATGTACAATGTGAAGAAACAAACAAGGGAATTACAAGGTAGAC
AAAAGCTAAGAATTTTAGAAGTATGTATAAGTGTGAATGTTCATGTATTC
ATACAAAAAATAATTATGTCTGCAAATGTAAGCACATAGTACCTATATAT
AAGGGCACATATGTACATTTTATCTTGATATTTTCGAAATAATATTTTGG
CAACAATATGACATTGTCATCTGACAGTGTTTTCTATGTTACAAATTAAG
TATATATATAAAAAAAAAACAAACTCAATTTTTATGTTTTTGCCTAGATT
TGTTGTTTCTACTGTGGCTGAAGATGATCAGAACCTGAAACTTCAGCTAA
ATTTTAATCATATCTTGGGGGAGAGGTAAGCCTGTGGCATATTGGATGAT
AAAAATCCAGGGCCTGTCATAAGAGGCTGATCTGCACAGTTGCATATCCT
CATTGGGAAAATGTCATCCAAAAGTGCATCTACAGAGTTCACTTTGTAGA
ACAACAAGAGTGCACAAAATTTCATAAAAAATATATTTTGTTCAATTAG

NNNCCAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCA
CTTTTTATTGGGGTTATTAGTATTTCTGTAGTCCAACTTCTGGAACTCTT
TGTATATACTGGATATTAGTCTCCTATCAGAAATAGGATTGGTAAAAATC
CTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTAACAGTATCTTTTGC
CTTACAGAAGCTTTGTAATTTTATGAGGTCCCATTTGTCGATTCTTGATC
TTAAAGCACAAGCCATTACTCTTCTGTTCAGGAATATTTCCCTTGTGCCC
AAATCATCAAGGCTTCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGAT
TTTATGTGGAGATCTTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGA
TAAGAATGGATCAATTCACATTCTTCTACATGATATCCACCAGTTGTGCC
AGCACCATTTGTTGAAAATGCTGTCCTTTTTTCACTGGATGGTTTTAGCT
CCTTTTTCAAAGATCAAGTGACCATAGGTGTGTGGGTTAATTTCTGGGTC
TTCAGTTCTATTCCATTGATCTTCCTGTCTGTCACTGTACCATGCATTAT
TTTTATCACAATTGTTCTGTAGGATAGCTTGAGGTCAGGTATGGTATTTG
CACCAGAGGTTCTTTTATTCTTTAGAATAGTTTTTGCTATCCTAGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_c18.b1 MSMg01no537_c18.b1 CHROMAT_FILE:
MSMg01no537_c18.b1 PHD_FILE: MSMg01no537_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:28 2005
         (690 letters)



>mm_chr5_55755689_55756779
          Length = 1091

 Score = 1181 bits (611), Expect = 0.0
 Identities = 680/731 (93%), Gaps = 46/731 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagtataaaaaa-atcacttgcttattaaatctggaattatagcaacctataa 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gaattctcagtataaaaaatatcacttgcttattaaatctggaattatagcaacctataa 221

                                                                       
Query: 64  acactgatttaaataagagtgaaatttatttttctacaggtaatatcaatttagtaaata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 acactgatttaaataagagtgaaatttatttttctacaggtaatatcaatttagtaaata 281

                                                                       
Query: 124 tgtaatctcaaaaaaacttgatttcagaaaatttatgtacaa-tgtgaagaaacaaacaa 182
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 282 tgtaatctcaaaaaaacttgatttcagaaaatttatgt-caaatgtgaagaaacaaacaa 340

                                                                       
Query: 183 gggaattacaaggtagacaaaagctaagaattttagaagtatgtataagtgtgaatgttc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gggaattacaaggtagacaaaagctaagaattttagaagtatgtataagtgtgaatgttc 400

                                                                       
Query: 243 atgtattcatacaaaaaataattatgtctgcaaatgtaagcacatagtacctatatataa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atgtattcatacaaaaaataattatgtctgcaaatgtaagcacatagtacctatatataa 460

                                                                       
Query: 303 gggcacatatgtacattttatcttgatattttcgaaataatattttggcaacaatatgac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gggcacatatgtacattttatcttgatattttcgaaataatattttggcaacaatatgac 520

                                                                       
Query: 363 attgtcatctgacagtgttttctatgttacaaattaagtatatatataaaaaaa------ 416
           |||||||||||||||||||||||||||||||||||||||||||||||| | | |      
Sbjct: 521 attgtcatctgacagtgttttctatgttacaaattaagtatatatatatatatatatata 580

                                                                       
Query: 417 -------------------------------------aaacaaactcaatttttatgttt 439
                                                |||||||||||||||||||||||
Sbjct: 581 tatatatatatatatatatatatatatatatatatataaacaaactcaatttttatgttt 640

                                                                       
Query: 440 ttgcctagatttgttgtttctactgtggctgaagatgatcagaacctgaaacttcagcta 499
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttgcctagatttgttgtttctaccgtggctgaagatgatcagaacctgaaacttcagcta 700

                                                                       
Query: 500 aattttaatcatatcttgggggagaggtaagcctgtggcatattggatgataaaaatcca 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aattttaatcatatcttgggggagaggtaagcctgtggcatattggatgataaaaatcca 760

                                                                       
Query: 560 gggcctgtcataagaggctgatctgcacagttgcatatcctcattgggaaaatgtcatcc 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gggcctgtcataagaggctgatctgcacagttgcatatcctcattgggaaaatgtcatcc 820

                                                                       
Query: 620 aaaagtgcatctacagagttcactttgtagaacaacaagagtgcacaaaatttcataaaa 679
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aaaagtacatctacagagttcactttgtagaacaacaagagtgcacaaaatttcataaaa 880

                      
Query: 680 aatatattttg 690
           |||||||||||
Sbjct: 881 aatatattttg 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space:   735080
Effective search space used:   735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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