BAC Information

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BAC

Clone NameMSMg01-537F19
Chromosome5 (Build37)
Map Location 123,831,920 - 123,832,348
singlet/doubletsinglet
Overlap genenone
Upstream geneAtpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a
Downstream geneMlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537F19.T7 (MSMg01no537_f19.b1)MSMg01-537F19.TJ (MSMg01no537_f19.g1)
ACCAG604352AG604353
length772752
length of high quality
(start - end)
249 (153 - 401)434 (77 - 510)
definitionCHROMAT_FILE: MSMg01no537_f19.b1 PHD_FILE: MSMg01no537_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:43 2005CHROMAT_FILE: MSMg01no537_f19.g1 PHD_FILE: MSMg01no537_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAACCTATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATG
CGCGGAATTCCTGTCGTGTACCATGTGACCACGACACCCCACGAAGAGGA
GAAGACAGTGACAACTGGTCAGGTAACAGAGCCTAGAGTTCTCCATGCTA
ATGAGGTGTCTAGGAGTCTCCGAGTGTGGCCAATGAGCTTCCCTTCATAG
GCATCCCTTCCCACAAAAGGTATTTCAGCTCTGGTTCACCCTGAGTACAT
CGCACACATCCCCATCTGCCAGGAATAAACAATTTGGACAAGCAAGGACT
GTCTCCTCCATCAAGAACCACCTTAGGAGAGGCCTTCGGTCATACAGAGC
CATGTCTAAGTCTCCTGCACAAGGCTCTTCCATACTCCTGCCATTCACCC
TGAGCTAAGCAGCATCCTGCCACCCTCCACCCCCATGCTCATGGTAGGCC
GAGGCTGTTCCTAACTCTTCAAGGTCAGCGCCCCCGCCCCCGTCACCCTG
TTCCTAACTTCCTGAGGTCATGTGGCCACCATTCCCAACTCAAGGTCCCC
CGTGGTGCCCCACTTGGCTAATGATAGCCCCACCCCTACCTCCTTCCTAC
TTCCTCCAAGGTTCTCATAAACCCTCTGGGGTGCCCTGGTAATTGAAGAA
CCCCCAGTCTCTTTCCTAGTCCCCCTCCTATCCCGGCCCCTGATTTTTTT
ATTTTATAAAGAAACTAAGGGGCTGGGTAACCCTTTATATTTTAAACTTG
TTTTTTGTTGTTCGGAGCCTCT
TTCCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTGGATCCTTCTGAGATAAGGT
GCTTGCTTGCAAAGGTATCAGTGTCTCTCTGGCCAGAGGTGACAACGGAA
GCGAAGCCGGTCCTGTTTGGCTTAGTGCATCCGACCTGCCACAGGCCTGG
GCTGCCCAGGCACGCGCAGCGGATGCACCGGCCCTGAACTCTTTCTCCGA
GTAGTCCCCAGAGGCGACGGCTGCCTTTCAGTTTCTCCACTTGTTTATTT
TCGAAGGGACGTTGCCAGACCACAAGGCCACCCCTGCCCTTTCATGGTGT
GCTACGGGAGATTTCAGGAAGAGCGAGAAGTCAAGACCCAGAAACCAATC
CTCCTGCCAGCAAAGGACCACAAGGAGCCCCAGCTGTTAGGTTGCAGGGG
TGCGCATCCGGCAGGTGACTCATTTGCAAAGTGGGATCAGAAAAGTCCCC
CGAAAACCCGGAACCTGGAAAATACTGATAGTGCTAATGGTGATTACAAA
CAGCCACTAAGAGGTGCTGAAATAATCGGACATCTGTGTGCAAAAATAAT
GACCCTGTACTTGGTACGTTAGTCACAAAATAAGCCATAATTAACCTACC
GAAGATGGTTCAGTGGTTAAGAGCATATACTTGGCTGGACGTAAGTGGCT
CATGCTTTTAAATCCCCGCCCCTGGGAAGGCAAAAACCGGTGGGAACTCT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_f19.g1 MSMg01no537_f19.g1 CHROMAT_FILE:
MSMg01no537_f19.g1 PHD_FILE: MSMg01no537_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:43 2005
         (434 letters)



>mm_chr5_123831719_123832548
          Length = 830

 Score =  795 bits (411), Expect = 0.0
 Identities = 426/433 (98%), Gaps = 4/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctggatccttctgagataaggtgcttgcttgcaaaggtatcagtgtctctctggccaga 61
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctgggtccttctgagataaggtgcttgcttgcaaaggtatcagtgtctctctggccaga 261

                                                                       
Query: 62  ggtgacaacggaagcgaagccggtcctgtttggcttagtgcatccgacctgccacaggcc 121
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 ggtgacaacggaagcgaagcgggtcctgtttggcttagcgcatccgacctgccacaggcc 321

                                                                       
Query: 122 tgggctgcccaggcacgcgcagcggatgcaccggccctgaactctttctccgagtagtcc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgggctgcccaggcacgcgcagcggatgcaccggccctgaactctttctccgagtagtcc 381

                                                                       
Query: 182 ccagaggcgacggctgcctttcagtttctccacttgtttattttcgaagggacgttgcca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccagaggcgacggctgcctttcagtttctccacttgtttattttcgaagggacgttgcca 441

                                                                       
Query: 242 gaccacaaggccacccctgccctttcatggtgtgctacgggagatttcaggaagagcgag 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gaccacaaggccacccctgccctttcatggtgtgctacgggagatttcaggaagagcgag 501

                                                                       
Query: 302 aagtcaagacccagaaaccaatcctcctgccagcaaaggaccacaaggagccccagctgt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 502 aagtcaagacccagaaaccaatcctcctgccagcaaaggaccacaaggagccccagctg- 560

                                                                       
Query: 362 taggttgcaggggtgcgcatccggcaggtgactcatttgcaaagtgggatcagaaaagtc 421
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ---gttgcaggggtgcgcatccggcaggtgactcatttgcaaagtgggatcagaaaagtc 617

                        
Query: 422 ccccgaaaacccg 434
           |||||||||||||
Sbjct: 618 ccccgaaaacccg 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 830
Length adjustment: 9
Effective length of query: 425
Effective length of database: 821
Effective search space:   348925
Effective search space used:   348925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)