Query= MSMg01no537_m06.b1 MSMg01no537_m06.b1 CHROMAT_FILE:
MSMg01no537_m06.b1 PHD_FILE: MSMg01no537_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:13 2005
(540 letters)
>mm_chr5_8843189_8844128
Length = 940
Score = 986 bits (510), Expect = 0.0
Identities = 528/534 (98%)
Strand = Plus / Minus
Query: 7 attctcttgactgctatgtctggatgtccttggacaactctgtgattactcatgtccatc 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 581 attctcttgactgctgtgtctggatgtccttggacaactctgtgattactcatgtccgtc 522
Query: 67 acttctcagtggtgcatgctgagttactcttgcatcctagggatgatcctaactctatca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acttctcagtggtgcatgctgagttactcttgcatcctagggatgatcctaactctatca 462
Query: 127 cagaccacatttcctgttttgatttcttgagacagcatctgactatgtgcctagagtgtc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cagaccacatttcctgttttgatttcttgagacagcatctgactatgtgcctagagtgtc 402
Query: 187 tttaacttgttagcagagattgacagctatcagtcttcctgtatcagaaaagtccggatc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttaacttgttagcagagattgacagctatcagtcttcctgtatcagaaaagtccggatc 342
Query: 247 acaagcattcactgtgcctgtcgtccgcagaggcttttcttacccagcattcgtatttac 306
|||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 341 acaagcattcgctgtgcctgttgtcggcagaggcttttcttacccagcattcgtatttac 282
Query: 307 tatgcattcatatagcttgggagggatttttgcaggttttggaaggtaggagaggttgct 366
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 281 tatgcattcatatagcttgggagggatttttgcaggttttggaaggtaggggaggttgct 222
Query: 367 gttctgtggggttgtttttgttctgtctgttttgttcttatcaggttttagtagttgggt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gttctgtggggttgtttttgttctgtctgttttgttcttatcaggttttagtagttgggt 162
Query: 427 aatgctagcttcttagcttcacagaatgagtacagaggtttcttccctttctcatacatt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aatgctagcttcttagcttcacagaatgagtacagaggtttcttccctttctcatacatt 102
Query: 487 gtacagagaactttttgttgggagacttattatcattaaatctcattttttcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 gtacagagaactttttgttgggagacttattatcattaaatctcattttttcat 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_m06.g1 MSMg01no537_m06.g1 CHROMAT_FILE:
MSMg01no537_m06.g1 PHD_FILE: MSMg01no537_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:13 2005
(651 letters)
>mm_chr5_8649734_8650787
Length = 1054
Score = 1133 bits (586), Expect = 0.0
Identities = 639/662 (96%), Gaps = 13/662 (1%)
Strand = Plus / Plus
Query: 1 actggtcatcattattaggacatgtatgtaattacatgctttttactgtccattttctaa 60
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 195 actggtcatcattattaggaaatgtatgtaattacatgctttatactgtccattttctaa 254
Query: 61 aacttgccctatttgttccttggagatatagatcctcctattgtctctgttttaatgatg 120
|||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 255 aacttgccttgtttgttccttggagagatagatcctcctattgtctctgttttaatgatg 314
Query: 121 ttgaagtctatgctttgagagggtga-------gta-acttgtccagaggtatccagcaa 172
|||||||||||||||||||||| | | ||| |||||||||||||||||||||||
Sbjct: 315 ttgaagtctatgctttgagagg-t-atccaaaggtatacttgtccagaggtatccagcaa 372
Query: 173 caattaatgaaacgggattaggccttccttagcccacttcgttctcatccttcaccaacc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 373 caattaatgaaacgggattaggccttccttagcccacttcgttctcatccttccccaacc 432
Query: 233 ccactgcaaag---aaaaaaaaagtaaaagaccttattcctttattctttttattctgtc 289
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccactgcaaaggaaaaaaaaaaagtaaaagaccttattcctttattctttttattctgtc 492
Query: 290 agtcacttaaaagaaggtttagaagacagtacctccccaggtgggggtggggggctggtg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agtcacttaaaagaaggtttagaagacagtacctccccaggtgggggtggggggctggtg 552
Query: 350 agtctaatgaagtttgaaagttgtagaggatctaggagaagatgcttggtggtggaaaaa 409
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agtctaatggagtttgaaagttgtagaggatctaggagaagatgcttggtggtggaaaaa 612
Query: 410 tccccagagcaccctaaggatggtgcgggcaggtaacctacgagttcaacctcagtaagc 469
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 613 tccccagagcaccctaaggacggtgcgggcaggtaacctaccagttcaacctcagtaagc 672
Query: 470 tttccatagcaccacgcccttagcacatggtgttctaaataagaagatgtgtactcttta 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tttccatagcaccacgcccttagcacatggtgttctaaataagaagatgtgtactcttta 732
Query: 530 cacgaggcactaataacaaaaaacccatttccatatagaatactagtaagtatcaaatta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cacgaggcactaataacaaaaaacccatttccatatagaatactagtaagtatcaaatta 792
Query: 590 aaagtaaagctaatttggaataggtgaagggttctttaatcaccatcaccattttgcctg 649
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 793 aaagtaaagctaatttggaataggtgaagggttctttaatcatcatcaccattttgcctg 852
Query: 650 ag 651
||
Sbjct: 853 ag 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1054
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1044
Effective search space: 669204
Effective search space used: 669204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
