BAC Information

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BAC

Clone NameMSMg01-537N15
Chromosome5 (Build37)
Map Location 111,310,738 - 111,494,501
singlet/doubletdoublet
Overlap geneTtc28
Upstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537N15.T7 (MSMg01no537_n15.b1)MSMg01-537N15.TJ (MSMg01no537_n15.g1)
ACCAG604722AG604723
length737743
length of high quality
(start - end)		664 (53 - 716)559 (81 - 639)
definitionCHROMAT_FILE: MSMg01no537_n15.b1 PHD_FILE: MSMg01no537_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:20 2005CHROMAT_FILE: MSMg01no537_n15.g1 PHD_FILE: MSMg01no537_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,493,868 - 111,494,501)(111,310,738 - 111,311,295)
sequence
NNNAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAAAGCTTGCCCTGATTTCATTCGCCAAGGAGACCAGA
GATCAGAAAGGGTCCTTCCCTGAGAAATATTTATATGCAATAAGCAGGGC
TAGCACAAGCAGACATGAAGAGACTCTAAGTACAAAAGACAATTTGGTCT
ATTTGAAAATCACTTACATTTTCTTTTGCTTATTCCAAGCAGTCTGGATT
TTCTTTTCTTTCTTTTCTTTTCTTCTTTTAATCATACAAAAGGAACAACC
ATAAATATACTTTGTAATAAAAGCAAAAGGGGGTCTCAGACCCTGGTCAC
ATCCTGCTGGCTTACTCTGTAGAATGACAACTGCTCTCACTCTGGTGAGA
GCTTAGCCTGTGTCTCACCAGCACCCTCCACACTGGAGGGGAGAGAGTCA
TGAGAGCCTCTGCTGAAAATCACTCTGGCTGTCTGGCTCACAGCAGCAGC
CACAGAGCATTCTGAGGGATGGGGTGGGAAATACCTCTGGCCCTTCAATG
AATGTCACAGAGTGACTTGTGGATGGAGAGGGCTGCGGGCTCGCGGCTCT
GCTGGCAGTTTGGCCTGATAGTCTGTGTCTCACCCGATCCTCCTAAGCAG
CTTTAGCCCCACTCCTGAATCCGTTACACTCACTGCATGTGGACTCCCTG
CTTATCCATGGCTTTCTTTGTTAATCATGGCACAGCA

NTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTATAAGAAAGGACCGTG
AGCCTGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGA
GGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTTGGGAAAAAAAAA
AAAAAAAAAAAAAAAAAAGAAGAAAGACCATGAGAGGTGAGATTGAGTCT
GGAGGAGAAAAACATAAGGTCAAGGGTGTCATCTCCAGGTGTGTTGTTTT
ATAACTTGGGATATTTTCTTTTCTCTTTCTTTTTTAAATTGTCTTTAGGG
GTTGAGGAAATGGCTCAGTGGGTAAAGTGCTTTCTATGCAAGCAGAGGAG
CTCCATTCCGCTGCTCCCACCTGAGGCTGGGCCAGGTGGCGGGGACCTGT
AACCCCAGAGCTGGGAATGTGGAGGAGGAGGTGGATCCCTGGTGCTCACT
GGCCAGCTGGCCTGTCCAAAACAGTGGGCTTTGGGTTTAGTGAGAAAGCC
GGGCAGTGGTGGCACACACCTTTAGTCCCAGCATTCAGGAGGAAGAGGCA
GGCAGATCTTTATGAGTTTAAGGCTAGTCTGGTCTACATAGAGTTCCAAG
ACAGCAGGACTGTTGTTACACAGAGAGATCCTATCTCAAAAAAATACCAA
CCAACCACCACCACCACCACCACCATCACCACCACCACCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_n15.b1 MSMg01no537_n15.b1 CHROMAT_FILE:
MSMg01no537_n15.b1 PHD_FILE: MSMg01no537_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:20 2005
         (664 letters)



>mm_chr5_111493441_111494501
          Length = 1061

 Score = 1091 bits (564), Expect = 0.0
 Identities = 618/638 (96%), Gaps = 5/638 (0%)
 Strand = Plus / Minus

                                                                        
Query: 28   tcattcgccaaggagaccagagatcagaaagggtccttccctgagaaatatttatatgca 87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 tcattcgccaaggagaccagagatcagaaagggtccttccctgagaaatatttatatgca 1002

                                                                        
Query: 88   ataagcagggctagcacaagcagacatgaagagactctaagtacaaaagacaatttggtc 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 ataagcagggctagcacaagcagacatgaagagactctaagtacaaaagacaatttggtc 942

                                                                        
Query: 148  tatttgaaaatcacttacattttcttttgcttattccaagcagtctggattttcttttct 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  tatttgaaaatcacttacattttcttttgcttattccaagcagtctggattttcttttct 882

                                                                        
Query: 208  ttcttttcttttcttcttttaatcatacaaaaggaacaaccataaatatactttgtaata 267
            ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 881  ttcttttcttttctttttttaatcatacaaaaggaacaactataaatatactttgtaata 822

                                                                        
Query: 268  aaagcaaaagggggtctcagaccctggtcacatcctgctggcttactctgtagaatgaca 327
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 821  aaagcaaaagggggtctcagaccctggtcacatcctgttggcttactctgtagaatgaca 762

                                                                        
Query: 328  actgctctcact-ctggtgagagcttagcctgtgtctcaccagcaccctccacactggag 386
            |||||||||||| | || |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 761  actgctctcactgcaggcgagagcttagcctgtgtctcaccagcaccctccacattggag 702

                                                                        
Query: 387  gggagagagtcatgagagcctctgctgaaaatcactctggctgtctggctcacagcagca 446
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701  gggtgagagtcatgagagcctctgctgaaaatcactctggctgtctggctcacagcagca 642

                                                                        
Query: 447  gccacagagcattctgagggatggggtgggaaatacctctggcccttcaatgaatgtcac 506
            |||||||||||||||||||||||||||||| ||| |||||||||||||    ||||||||
Sbjct: 641  gccacagagcattctgagggatggggtggggaatgcctctggcccttc----aatgtcac 586

                                                                        
Query: 507  agagtgacttgtggatggagagggctgcgggctcgcggctctgctggcagtttggcctga 566
            |||| |||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct: 585  agagcgacttgtggatggagaaggctgcgggctcccagctctgctggcagtttggcctga 526

                                                                        
Query: 567  tagtctgtgtctcacccgatcctcctaagcagctttagccccactcctgaatccgttaca 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  tagtctgtgtctcacccgatcctcctaagcagctttagccccactcctgaatccgttaca 466

                                                  
Query: 627  ctcactgcatgtggactccctgcttatccatggctttc 664
            ||||||||| | ||||||||||||||||||||||||||
Sbjct: 465  ctcactgcacgaggactccctgcttatccatggctttc 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1061
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1051
Effective search space:   687354
Effective search space used:   687354
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_n15.g1 MSMg01no537_n15.g1 CHROMAT_FILE:
MSMg01no537_n15.g1 PHD_FILE: MSMg01no537_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:20 2005
         (559 letters)



>mm_chr5_111310531_111311491
          Length = 961

 Score = 1004 bits (519), Expect = 0.0
 Identities = 549/563 (97%), Gaps = 9/563 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtataagaaaggaccgtgagcctggcagtggtggcgcacgcctttaatcccagcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aagtataagaaaggaccgtgagcctggcagtggtggcgcacgcctttaatcccagcactt 267

                                                                       
Query: 61  gggaggcagaggcaggcggatttctgagttcgaggccagcctggtcttgggaaaaaaaaa 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||||      |||
Sbjct: 268 gggaggcagaggcaggcggatttctgagttcgtggccagcctggtcttggg-----gaaa 322

                                                                       
Query: 121 aaaaaaaaaaaaaaaaaagaagaaagaccatgagaggtgagattgagtctggaggagaaa 180
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaaaaaaaaaagaagaagaagaaagaccatgagaggtgagattgagtctggaggagaaa 382

                                                                       
Query: 181 aacataaggtcaagggtgtcatctccaggtgtgttgttttataacttgggatattttctt 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 aacataaggtcaagggtgtcatctccaggtgcgttgttttataacttgggatattttctt 442

                                                                       
Query: 241 ttctctttcttttttaaattgtctttaggggttgaggaaatggctcagtgggtaaagtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttctctttcttttttaaattgtctttaggggttgaggaaatggctcagtgggtaaagtgc 502

                                                                       
Query: 301 tttctatgcaagcagaggagctccattccgctgctcccacctgaggctgggccaggtggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttctatgcaagcagaggagctccattccgctgctcccacctgaggctgggccaggtggc 562

                                                                       
Query: 361 ggggacctgtaaccccagagctgggaatgtggagg---agg-aggtggatccctggtgct 416
           |||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||
Sbjct: 563 ggggacctgtaaccccagagctgggaatgtggaggtggaggtaggtggatccctggtgct 622

                                                                       
Query: 417 cactggccagctggcctgtccaaaacagtgggctttgggtttagtgagaaagccgggcag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cactggccagctggcctgtccaaaacagtgggctttgggtttagtgagaaagccgggcag 682

                                                                       
Query: 477 tggtggcacacacctttagtcccagcattcaggaggaagaggcaggcagatctttatgag 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tggtggcacacacctttagtcccagcattcaggaggaagaggcaggcagatctttatgag 742

                                  
Query: 537 tttaaggctagtctggtctacat 559
           |||||||||||||||||||||||
Sbjct: 743 tttaaggctagtctggtctacat 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 961
Length adjustment: 10
Effective length of query: 549
Effective length of database: 951
Effective search space:   522099
Effective search space used:   522099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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