BAC Information

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BAC

Clone NameMSMg01-537P17
Chromosome5 (Build37)
Map Location 44,871,189 - 44,871,826
singlet/doubletsinglet
Overlap geneLdb2
Upstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747
Downstream geneLOC100041481, LOC100040737, Qdpr, EG624224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537P17.T7 (MSMg01no537_p17.b1)MSMg01-537P17.TJ (MSMg01no537_p17.g1)
ACCAG604822AG604823
length746748
length of high quality
(start - end)		644 (51 - 694)556 (78 - 633)
definitionCHROMAT_FILE: MSMg01no537_p17.b1 PHD_FILE: MSMg01no537_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:30 2005CHROMAT_FILE: MSMg01no537_p17.g1 PHD_FILE: MSMg01no537_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACGGCAATGTGTGGTGAGGATTATTAATGTACTTGTAGTC
TCTTTGTTCTGTGTTAAGATATATCCAATGTCGTATCATGCAGGCACACC
CATATACATAGAATACGTGTATCTTTAGAAAGTTCATACCTATGTCCCAA
AGCATGACTGGAATACTCCTAGCTACCAACCTTTCCTGACAAATGAATTG
CCATCTTCCTCTTGATGGCCTTTCATCCCCAGATCCTCTGAGAGCATATT
TATAAAGACAGTGAGGAACGAGGGCATACCTGGCGGGGCCACCATCCGCT
GCCACTTCTGAAACAGACAGGTCTTCAGGCAGTCTCGGGGACTGAGGTTG
TAGGTTTTGTGTCTCGACATCAGTTCCTGCATTGGCTCCAGTATTACACA
CAACTGCAAGGAATTCAAAGTCACCGGAGTTCTGCTACTTGATCATATTA
ATTACAATAATAATTCTAACAGCTGGAATCCATTAGACAGCTTAAGGGTT
TGGTTTCCCCCCCCCTTTCTTTCCTGGTTTTGATTTTCTCTATGTATGTT
TGAAGGGAAAGAAATATTACCCGTATTTGATTATGCCCACTTAANGTAGT
ATCATTTATTACATGGTATTACAGCCAAATGTGATTTACACACACACTTA
CACACAAACAGACACAGACACACAGACACACACAGATACACACAGG

NCACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGTCCAATCACTTTTAATA
TTAATACAGCAAGAACCCAGTGGTTGGATGGGGAGAAAGGAGGCAGAGTG
AAGAATTTCAGAGATGGGGATGGAGGAGAAGGAAGAAGGAGGAGGAGGAG
GAAGATGGTGGACAAACAGGATAATTCAGATTCTCCGTGGCTTTAAATAG
CCACAGGTAGTTATTATATCATATAGGGATAGAATAATTGGGATAACTTT
TCTAATCTAGGTGGGCAGCTTGTATCATTATCAATTGGTTCTGAAATTAT
TGTGTGGGCATCTTGTGAATTGAGAATTTATTAATATATAAATCTGACTG
ATTAATTACAAGCCTCTAGAGTTTTGATTTACTGGATTACTAGAATTTGG
GACCACTGACCACAGGGGGTGATGGCTGAAAAGGTACAGGTGGCACTGAG
GCAGGCGAACTGGAGCTGGGAGGATGGCCATACAGAAGCTGGCCTAGAGG
CGGCCGGACCACAGGCAGAGCATAGCTGGGTGTAGTGCGGGAACTTGCAG
CTCTTTTTAAAAATATTTTCCGCAACAAATGTATGTATTAATTTGTGTAA
CAATTGATTCAGCATTGGATAAAGGTGCATATGAATAAATATTAAAATTT
GTACTCCGTATAAATGTTGCTCAATACTTAAAATTATACTTAGTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_p17.b1 MSMg01no537_p17.b1 CHROMAT_FILE:
MSMg01no537_p17.b1 PHD_FILE: MSMg01no537_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:30 2005
         (644 letters)



>mm_chr5_44870986_44872026
          Length = 1041

 Score = 1195 bits (618), Expect = 0.0
 Identities = 634/641 (98%), Gaps = 3/641 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacggcaatgtgtggtgaggattattaatgtacttgtagtctctttgttctgtg 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatggcaatgtgtggtgaggattattaatgtacttgtagtctctttgttctgtg 263

                                                                       
Query: 64  ttaagatatatccaatgtcgtatcatgcaggcacacccatatacatagaatacgtgtatc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaagatatatccaatgtcgtatcatgcaggcacacccatatacatagaatacgtgtatc 323

                                                                       
Query: 124 tttagaaagttcatacctatgtcccaaagcatgactggaatactcctagctaccaacctt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttagaaagttcatacctatgtcccaaagcatgactggaatactcctagctaccaacctt 383

                                                                       
Query: 184 tcctgacaaatgaattgccatcttcctcttgatggcctttcatccccagatcctctgaga 243
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 tcctgacaaatgaattgccatcttcctcttgatggcccttcatccccagatcctctgaga 443

                                                                       
Query: 244 gcatatttataaagacagtgaggaacgagggcatacctggcggggccaccatccgctgcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcatatttataaagacagtgaggaacgagggcatacctggcggggccaccatccgctgcc 503

                                                                       
Query: 304 acttctgaaacagacaggtcttcaggcagtctcggggactgaggttgtaggttttgtgtc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acttctgaaacagacaggtcttcaggcagtctcggggactgaggttgtaggttttgtgtc 563

                                                                       
Query: 364 tcgacatcagttcctgcattggctccagtattacacacaactgcaaggaattcaaagtca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcgacatcagttcctgcattggctccagtattacacacaactgcaaggaattcaaagtca 623

                                                                       
Query: 424 ccggagttctgctacttgatcatattaattacaataataattctaacagctggaatccat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccggagttctgctacttgatcatattaattacaataataattctaacagctggaatccat 683

                                                                       
Query: 484 tagacagcttaagggtttggtttccccccccctttctttcctggttttgattttctctat 543
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 684 tagacagcttaagggtttggt---cccccccctttctttcctggttttgattttctctat 740

                                                                       
Query: 544 gtatgtttgaagggaaagaaatattacccgtatttgattatgcccacttaangtagtatc 603
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 741 gtatgtttgaagggaaagaaatattacctgtatttgattatgcccacttaaggtagtatc 800

                                                    
Query: 604 atttattacatggtattacagccaaatgtgatttacacaca 644
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttattacatggtattacagccaaatgtgatttacacaca 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1041
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1031
Effective search space:   653654
Effective search space used:   653654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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