Query= MSMg01no538_b21.b1 MSMg01no538_b21.b1 CHROMAT_FILE:
MSMg01no538_b21.b1 PHD_FILE: MSMg01no538_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:41 2005
(698 letters)
>mm_chr5_59243883_59244980
Length = 1098
Score = 1295 bits (670), Expect = 0.0
Identities = 688/694 (99%)
Strand = Plus / Minus
Query: 5 gaattcatgtgttctcaagaaagcattagatatatccattcatattatgttgagggcaaa 64
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 898 gaattcatgtgttctcaagaaagtattagagatatccattcatattatgttgagggcaaa 839
Query: 65 gaatctaagaggagaatggaagggaatatatgggagagttacaaagaggaaaagaaagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gaatctaagaggagaatggaagggaatatatgggagagttacaaagaggaaaagaaagaa 779
Query: 125 aaaaactcataattatattacatcttaaattgactaaaaataaaataacttgtgtaaata 184
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aacaactcataattatattacatcttaaattgactaaaaataaaataacttgtgtaaata 719
Query: 185 atttatacttgtctttatttaaataaattttggtaaaaatattgctttgaataggtaata 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atttagacttgtctttatttaaataaattttggtaaaaatattgctttgaataggtaata 659
Query: 245 agacttctccatgggatttaactattatctgatgcattgcccatgctagagacctttgat 304
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agacttctccataggatttaactattatctgatgcattgcccatgctagagacctttgat 599
Query: 305 aaatctggttaattatgctactagtgctctaagtatactaaacacatttgtaatgcattc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaatctggttaattatgctactagtgctctaagtatactaaacacatttgtaatgcattc 539
Query: 365 aaattagttatcttaaataacaatcgtactttgttttactatatgtgagttggaagtaag 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 538 aaattagttatcttaaataacaatcgtactttgttttattatatgtgagttggaagtaag 479
Query: 425 tagaaaacacagctaggcttttggctgaacccagtcaaagctgtccaggcttggatgaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tagaaaacacagctaggcttttggctgaacccagtcaaagctgtccaggcttggatgaac 419
Query: 485 tcactcataaagctggaatagctgactaagtcagaggaggattgcatttcacctcccagg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcactcataaagctggaatagctgactaagtcagaggaggattgcatttcacctcccagg 359
Query: 545 gcaggctttgcatgacttttcctggctttttcagaattccaagttgaagatataaaacaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcaggctttgcatgacttttcctggctttttcagaattccaagttgaagatataaaacaa 299
Query: 605 ccaaagcctaggtttacagttgctataagagcaatgccaattgccattggccaaaggaga 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccaaagcctaggtttacagttgctataagagcaatgccaattgccattggccaaaggaga 239
Query: 665 atacaagccaacacttccacagctggagaaattg 698
||||||||||||||||||||||||||||||||||
Sbjct: 238 atacaagccaacacttccacagctggagaaattg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_b21.g1 MSMg01no538_b21.g1 CHROMAT_FILE:
MSMg01no538_b21.g1 PHD_FILE: MSMg01no538_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:42 2005
(545 letters)
>mm_chr5_59058551_59059495
Length = 945
Score = 797 bits (412), Expect = 0.0
Identities = 458/474 (96%), Gaps = 2/474 (0%)
Strand = Plus / Plus
Query: 1 atcttcatcatctacagatataagttaattgttgcttattcaatgctaaatggtcggcct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 atcttcatcatctacagatataagttaattgttgcttattcaatcctaaatggtcggcct 260
Query: 61 tgaagtcatataattaaaaagcaacagttaatgaatggactaaccaagctgtatttatat 120
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagtcatataatttaaaagtgacagttaatgaatggactaaccaagctgtatttatat 320
Query: 121 gattgtgcatttacatgtatatgtaacaaaaataactacagaacaggtggctatcaattt 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttgtgcatttacatgtatatgtaacaaaaataactacagaacaggtggctatcaattt 380
Query: 181 gaaaggaaataagggtgaaacactgaaagtggatggaaggagaggacatgggacctactg 240
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaggaaataagggcgatacactgaaagtggatggaaggagaggacatgggacctactg 440
Query: 241 atgagaggatagggaagaaagtaattcatgtaaatatgttttattttttaaagagtacat 300
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 atgagaagatagggaagaaagtaattcatgtaaatatgttttaatttttaaagagtacat 500
Query: 301 taaaaataagtcttgtcaaatagcagaaatagaggtttgaagaatttagcatttctaaca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 taaaaataagtcttgtcaaatagcagaaatagaggtttgaagaatttagcatttctaata 560
Query: 361 tctggaattccttgctattcccaaggatatggtaagtgaactttatagcacaagtttttt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tctggaattccttgctattcccaaggatatggtaagtgaactttatagcacaagctttta 620
Query: 421 ttttttttcatttcattttattttattttattttattttattttattttatttt 474
|| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatttt--attttattttattttattttattttattttattttattttatttt 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
