Query= MSMg01no538_d14.b1 MSMg01no538_d14.b1 CHROMAT_FILE:
MSMg01no538_d14.b1 PHD_FILE: MSMg01no538_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:49 2005
(630 letters)
>mm_chr5_149225191_149226221
Length = 1031
Score = 1120 bits (579), Expect = 0.0
Identities = 615/627 (98%), Gaps = 1/627 (0%)
Strand = Plus / Minus
Query: 5 gaattctagccttacaaaactcatccaggaactctagccaagagtaaattaatcctcctg 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaattctagccagagaaaactcatccaggaactctagccaagagtaaattaatcctcctg 772
Query: 65 aaagccacacagcagcaagttcagtccgtatgtcaatgagttgtcttgcttaacccaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aaagccacacagcagcaagttcagtccgtatgtcaatgagttgtcttgcttaacccaata 712
Query: 125 ggggcgtttaaagaacgtggggttggccttgcctaaagtgtggtggcatgaaagacaagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggggcgtttaaagaacgtggggttggccttgcctaaagtgtggtggcatgaaagacaagg 652
Query: 185 gaattttccaagaaggaactcaacacgcaggatgggtcaaggccagcattaagggggaat 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 651 gaattttccaagaaggaactcaacatgcaggatgggtcaaggccagcattaagggggaat 592
Query: 245 gagggtattttgagacctagctctgcagatcatacagagtccgtccatcttgtttccaag 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 591 gagggtattttgagacctagctctgcagatcatacggagtccgtccatcttgtttccaag 532
Query: 305 atcccatggaagaggaggcaagaagaagagagggg-aaaacgtgtctttacaaaaaaaag 363
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 531 atcccatggaagaggaggcaagaagaagagagggggaaaacgtgtctttacaaaaaaaag 472
Query: 364 cccagggcagtgaagtgtgagcttctgtatcatgcattaagtgtatttgctgtttatgag 423
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||
Sbjct: 471 cccagggcagtgaagtgtgagcgtctgtatcacgcattaagtgtatttgctgtttgtgag 412
Query: 424 caacactacccacaacgagaagtcactggatagatcacagaagctggatgggattgtaac 483
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 411 caacactacccacaacgagaagtcactgggtagatcacagaagctggatggggttgtaac 352
Query: 484 acagaccccctgagcaggtaactagacacagagggaggtaaggatgtgtagtccttaggg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 acagaccccctgagcaggtaactagacacagagggaggtaaggatgtgtagtccttaggg 292
Query: 544 gtccctcacatgcctttccgctgggagctgcctctgcctctgtgatgctggaagacccac 603
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 291 gtccctcacatgcctttccgctgggagctgcctctgcctctgtgatgctggaggacccac 232
Query: 604 cattccacttttttagatgggggatgg 630
|||||||||||||||||||||||||||
Sbjct: 231 cattccacttttttagatgggggatgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_d14.g1 MSMg01no538_d14.g1 CHROMAT_FILE:
MSMg01no538_d14.g1 PHD_FILE: MSMg01no538_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:49 2005
(498 letters)
>mm_chr5_149056278_149057176
Length = 899
Score = 872 bits (451), Expect = 0.0
Identities = 479/499 (95%), Gaps = 19/499 (3%)
Strand = Plus / Plus
Query: 1 ttctgaaaaaaaaaatcttgagataccaaggatctgggatggtcataatacactttgttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctgaaaaaaaaaatcttgagataccaaggatctgggatggtcataatacactttgttg 260
Query: 61 ttttgaagaaactaagggtttagaaaaaaaa-tgatagtaagagagactgaataaacctc 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ttttgaagaaactaagggtttagaaaaaaaaatgatagtaagagagactgaataaacctc 320
Query: 120 ggtggtagagatttgctgagcatgtgcaaacccatgaattctaactccagcactacacac 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ggtggtagagatttgctgagcatgtgcaaacccatgaattctaactccagca-t------ 373
Query: 180 acacacacacacacacacacacacacacacacacacacagagttgctggagaacatgagt 239
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 -----------cacacacacacacacacacacacacacagagttgctggagaacatgagt 422
Query: 240 gtggaattaaaagtgaaaatggatattggtgaagaaccaagtctaaaaaaataaaaagct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtggaattaaaagtgaaaatggatattggtgaagaaccaagtctaaaaaaataaaaagct 482
Query: 300 gggacttggaatgcagggagctgatgggaaagtcagcaggcagtttgggaaaatgaggta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gggacttggaatgcagggagctgatgggaaagtcagcaggcagtttgggaaaatgaggta 542
Query: 360 tgtaatctttgtgtcttagttaggtttgcattgctgtgaagagacaccatgactaaggca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tgtaatctttgtgtcttagttaggtttgcattgctgtgaagagacaccatgactaaggca 602
Query: 420 actcttataaagaatagcatttaactggggctggcttacagtttcagaggttcagtccat 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 603 actcttataaagaatagcatttaactggggctggcttacagtttcagaggttcagttcat 662
Query: 480 tcatgaccagaagcatggc 498
|||||||||||||||||||
Sbjct: 663 tcatgaccagaagcatggc 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space: 433832
Effective search space used: 433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
