NCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCG
GAATTCAATGAAAATTTCTGTACAAAATTCATGGAACATAATGAAAGTAG
TGCTGAGAGAAAAGTTCATAACACTAAATGCCTTAATAAATAAATTAGAG
AGATCTCATACTAGCAATGTAAGAGCACATGTGAAAGTTTTAAAACAACA
GTAACAAAATCAAACACATCCAAGAGGAATACATGGTAGGAAGTAATCAA
ACTGAGGTCTGAAATCAATAAAATAGAAACAAAGAGAACGATACAAACAA
TCAATGAAACAAAGTACCGGTCCTTTGAGAAAATTAACAAGGTAGAGAAT
CTTTATCCAAACTAACTAAAAAGGCACACTGAGAAAATATCCAAATTATA
AAATTGGAAAAGAAAAGGAAAACAGAACAACAGGCACTGAGGAAATCCAA
AAAAATCATTATAGCATACTTCAAAATCTGTACTCCACAAAACTGGAAAA
CCTAAAAGAAACAGACAATTTTTCTCATAGATACCAGTAAACAAAATTAG
ATCAGCTCACTGGCACAAAAGATAACTTCCTGAATAGGACACAATCATGC
AGGCACTAAGTTTGACAATTAATAAGTAGGATCGTGTGAAACTGGAAAGG
CTTTTATAAAACAACGAGTACTGTCAATAAGACAAAAACAGAAAAGATTT
TCATTNCATCCATATCTGGCAGGGAATTNATTTCCAAATATATAAAGAAA
CTCAGAAAGAAGACAGTCNCNAACAGATAAAAATGG

NCGATTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTAGAATTTTAAATCAATT
TCAGGACTACACTTTGTAAATACCATAGATGTTTAAAATAATGTGTGGTG
CTTGATATTTTAACTACATATCTCTGTTTATTTTTTAAAAAGCCAGATAT
CTTTGTATATGTAAATATAATTCTTAGTTTTAAAAATTATGTATATGTGT
GTCTGAATGAGGAAACAGGCACGTGAGTGCAGTGCCCACAGAGGCCAGAA
GATCTCTGGAAGCTAGAGTTAAAGGGTAATTAGCCTTCAGACATGGGTGT
GGGGAAACTGAAATATGGTTCTCTGAAAGAGCAGTACATACTTTCAACTG
ATGAGCTATCTCTCTCCAGTCCTGTCCAGCTGTTTTTTAACCACAGTTGT
CTTAAAACAAACAGAAACTTTCTACTTAAAGACTAGCTGAAATTGAACAA
CTTAAGGCAATATAATAATCTTTCATTTGTTTTGCTGTTGCTGGGTTGCT
ATGATTTTTATTTGCATAATGGCTCTGAAATTCCTTGACTATGTCACTCA
GATACTCCAAGTTTTAAAATAGTACATTTGTTACATCAAATATCAGATGA
TCTGCTAAGTGACAGAGTTAAAGACTGATTTTTTTTTCATATTGAAATAC
AATCATCAATAATATGTCAATTTCCTGCTGGTGATTCACTTGAAGAAGCA
AATTATAAACATTATTTCT

Query= MSMg01no539_d21.g1 MSMg01no539_d21.g1 CHROMAT_FILE:
MSMg01no539_d21.g1 PHD_FILE: MSMg01no539_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:07 2005
         (653 letters)



>mm_chr5_40964337_40965389
          Length = 1053

 Score = 1232 bits (637), Expect = 0.0
 Identities = 649/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgtagaattttaaatcaatttcaggactacactttgtaaataccatagatgtttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgtagaattttaaatcaatttcaggactacactttgtaaataccatagatgtttaaa 260

                                                                       
Query: 61  ataatgtgtggtgcttgatattttaactacatatctctgtttattttttaaaaagccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatgtgtggtgcttgatattttaactacatatctctgtttattttttaaaaagccaga 320

                                                                       
Query: 121 tatctttgtatatgtaaatataattcttagttttaaaaattatgtatatgtgtgtctgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctttgtatatgtaaatataattcttagttttaaaaattatgtatatgtgtgtctgaa 380

                                                                       
Query: 181 tgaggaaacaggcacgtgagtgcagtgcccacagaggccagaagatctctggaagctaga 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tgaggaaacaggcacttgagtgcagtgcccacagaggccagaagatctctggaagctgga 440

                                                                       
Query: 241 gttaaagggtaattagccttcagacatgggtgtggggaaactgaaatatggttctctgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaaagggtaattagccttcagacatgggtgtggggaaactgaaatatggttctctgaa 500

                                                                       
Query: 301 agagcagtacatactttcaactgatgagctatctctctccagtcctgtccagctgttttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 agagcagtacatactttcaactgatgagctatctctctccagtcctgtccagctgtcttt 560

                                                                       
Query: 361 taaccacagttgtcttaaaacaaacagaaactttctacttaaagactagctgaaattgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaccacagttgtcttaaaacaaacagaaactttctacttaaagactagctgaaattgaa 620

                                                                       
Query: 421 caacttaaggcaatataataatctttcatttgttttgctgttgctgggttgctatgattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caacttaaggcaatataataatctttcatttgttttgctgttgctgggttgctatgattt 680

                                                                       
Query: 481 ttatttgcataatggctctgaaattccttgactatgtcactcagatactccaagttttaa 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 ttatttgcataatggctctgaaatcccttgactatgtcactcagatactccaagttttaa 740

                                                                       
Query: 541 aatagtacatttgttacatcaaatatcagatgatctgctaagtgacagagttaaagactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatagtacatttgttacatcaaatatcagatgatctgctaagtgacagagttaaagactg 800

                                                                
Query: 601 atttttttttcatattgaaatacaatcatcaataatatgtcaatttcctgctg 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttttttttcatattgaaatacaatcatcaataatatgtcaatttcctgctg 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)