NCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCAAGACTTTTACCATGAATGGGTGTTGGATTTATC
AAATGCTTTCTCCGAATCTAATGAGATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATACTGGATTATGCTGATGGATTTCCGTATATTGAACCAT
CCTTGCATCCCTGGGATGAAACCTATTGGTCAGGATAGATGATTGTTTTG
ATGTGTTCCTGGATTCTGTTAGCGAGAACTTTATTGAGGATTTTTGCATT
GATATTCATAAGGGAAACTGGTCTGAAGTTCTCTATCTTTGTTGGGTGTT
TTTGTGGTTTAGGCATCAGAGTAATTGTGGCTTCATAGAATAAGTTGGGT
AGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGTGAAGAAGTGGGAT
TAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTC
CTGGGCTTTTTTTGATTTGGAGACTATTAATGACTATTTCTATTTCTTTA
GGGGATATGGGACTGTTTAGATCATTAAGCTGATCTTGATTTAACTTTGG
TGCCTGTTATCTGTCTAGAAACTGGTCCATTTCATCCAGGTTTTCCAGTT
TTGTTGAGTATAGCCCTTTGTAAAANGATCTGATGGTGTTTTGGATTTCT
TCAGGATCCGTTGCTATGTCTCCTTTTTCATTTCTGAGGTTGTTAATTAG
AATACTTTCCCTGTTGCCTCTAGTGAGCCCAGCTTAAGGTTTATCTATC

NCCCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGTGACATTCAACAAAGAGC
TAATGTCCATACTCCTCAAATTATTCACAAAATAGAAACAGAAGAAACAT
TGCTAACTCATTCTATGAGGTCATAGTCACCCTGATACTCAAACCACACA
CAGTCTCAACATGGGAAGGGAATTTCAGTCCAATTTCTCCTTTTTAACCT
TTCCAAGCAAATTTTCTTATCTTCCTAATAAGGAAGAACATGTCTTTCTT
GTATATTTAAAGTCATGAAATTAGGCACTGCTATAGGACAGAAGGTAATT
GGGTTTGTAAGAAGTGATGTAAAGTGCCAGTGCCTGGCAAATACAGAAGT
GGATGCTCACAGTCATCCATTGGATGGAGCACAGGGCCCCCAATGGTGGA
GCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGAAG
AACAACAATATGAACTAACCAGTACCCTTAGAGCTCCTTGTGACTAAATC
ACCAATCAAAGAATACCCATGGTGGAACTGGTGACTCTAGCTGCATATGT
AGCAGAGGATGGCCTACTCATCAATGGGAGGAGAGACCCTAGGCCTGTGA
AGTTTCTATGACCCAGTATAGGGGAATTCCAGGGACAGGAATAGGAGTGA
GTGGTTTGGGGAGCAGGGACAAGAGGGGGGATTGTGATTTGCAGAGGTGA
AACN

Query= MSMg01no539_h15.g1 MSMg01no539_h15.g1 CHROMAT_FILE:
MSMg01no539_h15.g1 PHD_FILE: MSMg01no539_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:27 2005
         (637 letters)



>mm_chr5_3053099_3054135
          Length = 1037

 Score = 1073 bits (555), Expect = 0.0
 Identities = 618/639 (96%), Gaps = 2/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtgacattcaacaaagagctaatgtccatactcctcaaattattcacaaaatagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tatgtgacattcaacaaagagctaatgtccatactcctcaaattattcacaaaatagaaa 259

                                                                       
Query: 61  cagaagaaacattgctaactcattctatgaggtcatagtcaccctgatactcaaaccaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 260 cagaagaaacattgctaactcattctatgaggtcatagtcaccctgatacccaaaccaca 319

                                                                       
Query: 121 cacagtctcaacatgggaagggaatttcagtccaatttctcc-tttttaacctttccaag 179
           || ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| 
Sbjct: 320 caaagtctcaacatgggaagagaatttcagtccaatttctccttttttaacctttccaat 379

                                                                       
Query: 180 caaattttcttatcttcctaataaggaagaacatgtctttcttgtatatttaaagtcatg 239
           ||||||||| |||||||||||||||||| |||||||||| | ||| ||||||||||||||
Sbjct: 380 caaattttcctatcttcctaataaggaaaaacatgtcttgcgtgtgtatttaaagtcatg 439

                                                                       
Query: 240 aaattaggcactgctataggacagaaggtaattgggtttgtaagaagtgatgtaaagtgc 299
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaattgggcactgctataggacagaaggtaattgggtttgtaagaagtgatgtaaagtgc 499

                                                                       
Query: 300 cagtgcctggcaaatacagaagtggatgctcacagtcatccattggatggagcacagggc 359
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 500 cagtgcctggaaaatacagaagtggatgctcacagtcatctattggatggagcacagggc 559

                                                                       
Query: 360 ccccaatggtggagctagagaaagtacccaaggagctgaaggggtttgcagccccatagg 419
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 560 ccccaatggtggagctagagaatgcacccaaggagctgaaggggtttgcagccccatagg 619

                                                                       
Query: 420 aagaacaacaatatgaactaaccagtacccttagagctccttgtgactaaatcaccaatc 479
           | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aggaacaacaatacgaactaaccagtacccttagagctccttgtgactaaatcaccaatc 679

                                                                       
Query: 480 aaagaatacccatggtggaactggtgactctagctgcatatgtagcagaggatggcctac 539
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaagaatacacatggtggaactggtgactctagctgcatatgtagcagaggatggcctac 739

                                                                       
Query: 540 tcatcaatgggaggagagaccctagg-cctgtgaagtttctatgacccagtataggggaa 598
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 740 tcatcaatgggaggagagaccctgggtcctgtgaagtttctatgacccagtataggggaa 799

                                                  
Query: 599 ttccagggacaggaataggagtgagtggtttggggagca 637
           |||||||||||||||| ||||||||||||||||||||||
Sbjct: 800 ttccagggacaggaatgggagtgagtggtttggggagca 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)