BAC Information

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BAC

Clone NameMSMg01-540C13
Chromosome5 (Build37)
Map Location 47,038,450 - 47,039,095
singlet/doubletsinglet
Overlap genenone
Upstream gene1600023N17Rik, Lcorl, LOC100041576, EG666103
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540C13.T7 (MSMg01no540_c13.b1)MSMg01-540C13.TJ (MSMg01no540_c13.g1)
ACCAG606476AG606477
length7451,142
length of high quality
(start - end)		649 (51 - 699)---
definitionCHROMAT_FILE: MSMg01no540_c13.b1 PHD_FILE: MSMg01no540_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:20 2005CHROMAT_FILE: MSMg01no540_c13.g1 PHD_FILE: MSMg01no540_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTCTTTACCTAAACACTCAAAAATAAGAATAAATAAATT
GTAAAAATAAAGACATGAAGTTGGGGAAAATATAATGAGAGGGAGTTCTG
GATACACTACAATAGTGGAGATGAGATGTATATATGAGCAGGAAACATTG
TTCAGGCTCTAGAGAAGAGGCTATAAGATTAAGAGCACTGGCTGTTCCTC
CAGAGGATTAAGGTTTAGTGGCTAGCACCTAATTGGCAACTCACCACTGT
CTTGTAACTCCAGTCTCTGAGGATCCAATGTTCTCTTCTGGTCTTCAGTA
TACCAGGCATATATATGGTTTACATACGTGCATGAGGAAAAAAAAACTCA
TACATACAAAATTAATTAATTAATTAATTAATTAGTTAATATGCATAAGA
AAAATTCAAATGTAATGTGTATATATTACATTATATATACACATGGAAAT
TTCAAAGAATAAATGAGAGAAAAGGAGATACAGGTGGCAAGCATGCAGAT
AGAATGTTATTTGGCCTTAATACTAAAAAGATAATGTAAGAAATATCTAA
AGAATATATTTACATGTAGTATCCCTAGAAAAAGCATTGCATAAATGCTT
GCAACTGCTTTATTTTTAGTTTGTATGCACATGCCATTTACTTAGTAAAA
TATACACTTGTCAGCAGCATGCCCAATCCATGCAATGGGATACCC

AGTACGAACTAGCGGGAACCCTCACGGCCAAACTGAACTGAGTACTTTTC
CCCCCACCTGAGGGCCCCNCCAGTGGAGACGCCGTTTCCCTAGGTTTATC
GCGGCGCGGGCGGCGTATTTTATATATCACGCGCGTTATTGAATCCTATA
ATAATCCAACGATAGCTCCCTGCGCGGGTGTTGCTATCCTGTTGTGTTGA
GCGGTGTTTTTCGCCCGCACGAATATGTGATAGGATCGTGAAGTATCTCG
AATAACTCTATATTATATACACGTCTCACCTCGCGATCCACTACACATTA
CTCTATATTCTCCGCTACGCCCACAACATTAACATTGACATGTGTAATAT
NTCGAGGGAGGTGTACGGTGCCCCTTGTGTGTACCAGAGTATCCGCGCGA
TAAGTGATGGTAGGTCGACGGCGATATATTCTATACTGATCAGCCGCTCG
GCTCGAATAGAGACGATATGTTACCGCTATAGCACCGGCGCATCGCGCCT
TCCGGCCGTTTATATTTTCTTTTCTGCTTCTTTGTCCGCCTGCGTATCAC
ATTATTATTATAAATTGTGGATCTTAGGTTAGCGCTTCGGCAATCCCCAT
TGCGCGGGCTATANATATTTCGCACAATATGACGGTACCGCAATGCGATG
CATGACACCACCGTGCATCCACTAATGCGTGCACCGCATAGCACCCATGA
TATGTTTGTGTTCATGAATAAACCGATCTTAAGTGTAACCGCGGAGGCAG
GTGATGTACGAAGAGAGACGTTAAAGGCACTGCAGGGTGTTGTGTCGAGG
GGACGGGATAACTGCATGCACAAGAAGTGTCAATTGAGACGGGCACATAG
AGAGGAATAGTAGCTGTATATGCGTGCGGAGTGGCCCGATAGGTCAGGAG
AGACCAACATAAAAAATGAACGAGTGTGGCGAAGCCGGAGAAGATTAGTG
TCGTGATTCACTGTGCCGCGGGACGATGCATTACTGACTGGTCAGCAGAT
ATAGTATCGCTATCGGCAGTCATTATGTTGATTAGCTGTATGTATAGTGG
TTGATGGCCTCACCGCTCCACGTCAGTTCGTAACTAATACATAGACTGGT
GTTATGATTATACGTCGGTCACACTCACTTCTGTTGTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_c13.b1 MSMg01no540_c13.b1 CHROMAT_FILE:
MSMg01no540_c13.b1 PHD_FILE: MSMg01no540_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:20 2005
         (649 letters)



>mm_chr5_47038247_47039295
          Length = 1049

 Score = 1187 bits (614), Expect = 0.0
 Identities = 638/646 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctctttacctaaacactcaaaaataagaataaataaattgtaaaaataaaga 63
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctctgtaggtaaacactcaaaaataagaataaataaattgtaaaaataaaga 263

                                                                       
Query: 64  catgaagttggggaaaatataatgagagggagttctggatacactacaatagtggagatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgaagttggggaaaatataatgagagggagttctggatacactacaatagtggagatg 323

                                                                       
Query: 124 agatgtatatatgagcaggaaacattgttcaggctctagagaagaggctataagattaag 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agatgtatatatgaccaggaaacattgttcaggctctagagaagaggctataagattaag 383

                                                                       
Query: 184 agcactggctgttcctccagaggattaaggtttagtggctagcacctaattggcaactca 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcactggctgttcttccagaggattaaggtttagtggctagcacctaattggcaactca 443

                                                                       
Query: 244 ccactgtcttgtaactccagtctctgaggatccaatgttctcttctggtcttcagtatac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccactgtcttgtaactccagtctctgaggatccaatgttctcttctggtcttcagtatac 503

                                                                       
Query: 304 caggcatatatatggtttacatacgtgcatgaggaaaaaaaaactcatacatacaaaatt 363
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 caggcatatatatggtttacatacgtgcatgaggaaaaaaaacctcatacatacaaaatt 563

                                                                       
Query: 364 aattaattaattaattaattagttaatatgcataagaaaaattcaaatgtaatgtgtata 423
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 aattaattaattaattagttagttaatatgcacaagaaaaattcaaatgtaatgtgtata 623

                                                                       
Query: 424 tattacattatatatacacatggaaatttcaaagaataaatgagagaaaaggagatacag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tattacattatatatacacatggaaatttcaaagaataaatgagagaaaaggagatacag 683

                                                                       
Query: 484 gtggcaagcatgcagatagaatgttatttggccttaatactaaaaagataatgtaagaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtggcaagcatgcagatagaatgttatttggccttaatactaaaaagataatgtaagaaa 743

                                                                       
Query: 544 tatctaaagaatatatttacatgtagtatccctagaaaaagcattgcataaatgcttgca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tatctaaagaatatatttacatgtagtatccctagaaaaagcattgcataaatgcttgca 803

                                                         
Query: 604 actgctttatttttagtttgtatgcacatgccatttacttagtaaa 649
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 actgctttatttttagtttgtatgcacatgccatttacttagtaaa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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