Query= MSMg01no540_j11.b1 MSMg01no540_j11.b1 CHROMAT_FILE:
MSMg01no540_j11.b1 PHD_FILE: MSMg01no540_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:54 2005
(492 letters)
>mm_chr5_15832464_15833354
Length = 891
Score = 905 bits (468), Expect = 0.0
Identities = 486/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 ataaaatcctagtaggatttcatatcacatagtgtcctctctcaacaaatttccaactcc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ataaaatcctagtagggtttcatatcacatagtgtcctctctcaacaaatttccaactcc 632
Query: 61 ctaaaaggtcagattcttcgaaatccaggtcagactcataggaaaccactccagtccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ctaaaaggtcagattcttcgaaatccaggtcagactcataggaaaccactccagtccact 572
Query: 121 ggaaactaaaaatttcctttttttttttaactttaaatatttcaaggacattacatttgg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggaaactaaaaatttcc-ttttttttttaactttaaatatttcaaggacattacatttgg 513
Query: 181 gctttaataagtataagtgagtgggaaaagttggcatgacaaaacaaatctgcaaaatat 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 512 gctttaataagtataagtgagtgggaaaacttggcatgacaaaacaaatctgcaaaatat 453
Query: 241 aggatggatctaatttgcttaaaatattttcagtttgatggtgaaaattaagaggttgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aggatggatctaatttgcttaaaatattttcagtttgatggtgaaaattaagaggttgac 393
Query: 301 ttttaaaatatcaaactttactatgctcatgctccttccccaggctcttcatgcgtcatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttttaaaatatcaaactttactatgctcatgctccttccccaggctcttcatgcgtcatt 333
Query: 361 tctttccgtcactgtgtcacagggaagcagcctctgagagactgtgccagcatgccctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tctttccgtcactgtgtcacagggaagcagcctctgagagactgtgccagcatgccctgt 273
Query: 421 gctcactccagagtaactatgaacttaataatttctgatctcctattacataactatctt 480
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 272 gctcactccagagtaactatgaacttaataatttctgcgctcttattacataactatctt 213
Query: 481 tactattatcaa 492
||||||||||||
Sbjct: 212 tactattatcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_j11.g1 MSMg01no540_j11.g1 CHROMAT_FILE:
MSMg01no540_j11.g1 PHD_FILE: MSMg01no540_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:55 2005
(515 letters)
>mm_chr5_15691267_15692181
Length = 915
Score = 973 bits (503), Expect = 0.0
Identities = 512/515 (99%)
Strand = Plus / Plus
Query: 1 atgtaatcccagtaccaggaactaggagctagcagaactaggtgaaacccagcagctcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtaatcccagtaccaggaactaggagctagcagaactaggtgaaacccagcagctcgt 260
Query: 61 gaaccaaagtgtcttgccaactggtgaggtccaggttcagtgagaaacccttaaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaccaaagtgtcttgccaactggtgaggtccaggttcagtgagaaacccttaaaaaata 320
Query: 121 agatgtgtagaactaaggtctgtttgatgttagggagccatttgctaagttatacagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgtgtagaactaaggtctgtttgatgttagggagccatttgctaagttatacagcct 380
Query: 181 tagcctgcaggggggcagctttgtgcatagaacatgggaagtggagctttcagaagctaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcctgcaggggggcagctttgtgcatagaacatgggaagtggagctttcagaagctaa 440
Query: 241 agttctccacctaaggacattccttttgtttatcaggattattacacctcaaattttagt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 agttctccacctaaggacattccttttgtttatcaggattattacacctcaaattttaat 500
Query: 301 acatgacgttactaccgctacacatgtaactggaaatgaaattttgctcaggaagtcatg 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 acatgacgttactaccgctacacatgaaactggaaatgaaattttgctcaggaagtcatg 560
Query: 361 tggaccttgataataggtggactggggctcaagtttcatttttgtcactatctgagccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaccttgataataggtggactggggctcaagtttcatttttgtcactatctgagccat 620
Query: 421 tgtctttacttgccttgatttctggttttcatattgtacatctttaagttttgttgaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtctttacttgccttgatttctggttttcatattgtacatctttaagttttgttgaggt 680
Query: 481 ttgatcttttgcttgtattgtaatgctaatcactg 515
||| |||||||||||||||||||||||||||||||
Sbjct: 681 ttggtcttttgcttgtattgtaatgctaatcactg 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
