Query= MSMg01no540_m14.b1 MSMg01no540_m14.b1 CHROMAT_FILE:
MSMg01no540_m14.b1 PHD_FILE: MSMg01no540_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:11 2005
(685 letters)
>mm_chr5_117704006_117705090
Length = 1085
Score = 1247 bits (645), Expect = 0.0
Identities = 672/681 (98%)
Strand = Plus / Minus
Query: 5 gaattctgggaggtagggaatcgtgcttcatttgggatgggaggatgagggagccacatg 64
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 885 gaattctgggaggaagggaatcgtgcttcatttgggatgggagggtgagggagccacatg 826
Query: 65 caggaactctccaccctggcttcccagagcacgtgggcagtgtgaagagggaggggaact 124
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 825 caggaactctccaccctggcttcccagagcacatgggcagtgtgaagaggaaggggaact 766
Query: 125 agagcaactgggatgcttactcgtctgtggagggcaagaggatacttctgagagtgcagc 184
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 765 agagcaactgggatgctcactcgtctgtggagggcaggaggatacttctgagagtgcagc 706
Query: 185 gcactctctcaccctccttcataccgaccagctcagctcctgcttggctgacactcacac 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acactctctcaccctccttcataccgaccagctcagctcctgcttggctgacactcacac 646
Query: 245 acctgcacccacccgcttttcttaacgtttgtcacaaaccaccactacttagatgagttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 acctgcacccacccgcttttcttaacgtttgtcacaaaccaccactacttagatgagttt 586
Query: 305 tgcctctcgccagtaggtgctataactcagagaggttgggggatgcatctctttatgcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgcctctcgccagtaggtgctataactcagagaggttgggggatgcatctctttatgcca 526
Query: 365 tgacgtcaccctaggttcagccttgaatctgtgggtctaggctcagatatgaccataagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgacgtcaccctaggttcagccttgaatctgtgggtctaggctcagatatgaccataagg 466
Query: 425 agccactccaaaatcaagcctggattattcatgtcctttgcattcccctgtgattggctc 484
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 465 agccactccaaaatcaagcctggattattcatgccctttgcattcccctgtgattggctc 406
Query: 485 atgagtgaaattctaaaggtttccggacatacacgttgaacactttctactcagtaagtg 544
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atgggtgaaattctaaaggtttccggacatacacgttgaacactttctactcagtaagtg 346
Query: 545 gctgaggccaactcagattggctttgagccttgcttttctccaagaaaagatccaaacct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gctgaggccaactcagattggctttgagccttgcttttctccaagaaaagatccaaacct 286
Query: 605 tctatgttctatcatatgaacatgatgacccaaagctaacctgggcaactgggctgggaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tctatgttctatcatatgaacatgatgacccaaagctaacctgggcaactgggctgggaa 226
Query: 665 tgggacaggactctgggatgg 685
|||||||||||||||||||||
Sbjct: 225 tgggacaggactctgggatgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_m14.g1 MSMg01no540_m14.g1 CHROMAT_FILE:
MSMg01no540_m14.g1 PHD_FILE: MSMg01no540_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:11 2005
(544 letters)
>mm_chr5_117628653_117629595
Length = 943
Score = 977 bits (505), Expect = 0.0
Identities = 535/545 (98%), Gaps = 3/545 (0%)
Strand = Plus / Plus
Query: 1 atctctggtcattgaatgcacagaaacctccctttactgttgacagacttttctatgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctctggtcattgaatgcacagaaacctccctttactgttgacagacttttctatgacc 260
Query: 61 tccacattcagttatatagtcccatcctggcagcatagcccacaggtcaagagatcaggc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccacgttcagttatatagtcccatcctggcagcatagcccacaggtcaagagatcaggc 320
Query: 121 actaaagctgggaagacagctcagtggataggagcacttgctttgcagacacctggacct 180
|||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 actagagctgggaaggcagctcagtggataggagcgcttgctttgcagacacctggaccc 380
Query: 181 aagttcaaatctccaccacccacataaaacattggttgaaactttgtgtgtctatcaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttcaaatctccaccacccacataaaacattggttgaaactttgtgtgtctatcaccc 440
Query: 241 cagcattgtgtgtcagagacaggaggatcctgagagtttgctggccagtgagagacccta 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cagcattgtgtgtcagagacaggaggatcctgagagttagctggccagtgagagacccta 500
Query: 301 atgcagagggtgacagaggct-ctctgacatcctgctctgccccctgcatgcaagctgcc 359
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcagagggtgacagaggctgc-ctgacatcctgctctgccccctgcatgcaagctgcc 559
Query: 360 cccccacccacagacctgtgcatactgtttacggtactatgtactggagtacagactgtc 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccc-acccacagacctgtgcatactgtttacggtactatgtactggagtacagactgtc 618
Query: 420 tcagggtacaaagaccctaaagtctcgctcagtgctggacacacaggtgacatttagtat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcagggtacaaagaccctaaagtctcgctcagtgctggacacacaggtgacatttagtat 678
Query: 480 gcttgctgagtgaatgaaggaatgtgtgataaattaagcaaataaccaaaaataagcttt 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 679 gcttgctgagtgaatgaaggaatgtgtgataaattaagcaaataagcaaaaataagcttt 738
Query: 540 aaaaa 544
|||||
Sbjct: 739 aaaaa 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
