Query= MSMg01no541_f17.b1 MSMg01no541_f17.b1 CHROMAT_FILE:
MSMg01no541_f17.b1 PHD_FILE: MSMg01no541_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:58 2005
(689 letters)
>mm_chr5_40350013_40351100
Length = 1088
Score = 1104 bits (571), Expect = 0.0
Identities = 657/687 (95%), Gaps = 6/687 (0%)
Strand = Plus / Minus
Query: 6 ggaattcagtttaccccaactcattcagagtgctattgattcctcacttctacataagtt 65
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 757 ggaattcagtttaccccaactcactcagagtgctattgattgctcacttctacataagtt 698
Query: 66 ctaatttattcaattattcaatgtaaataattttaaatggattttctgtggtatgctgtg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 697 ctaatttattcaattattcaatgtaaataattttaaatggattttctgtggtaagctgtg 638
Query: 126 atatacatgtactttattcttatttgatacactaaagtttaatgctttgtctatttttgt 185
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 637 atatacatgtacttttttcttatttgaaacactaaagtttaatgctttgtctatttttgt 578
Query: 186 ttttcagattcaacaccattttttttgttttgattttttcctcagatttttacttttttt 245
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 577 ttttcagattcaacaccattttttttgttttgattttctcctcagatttttacttttttt 518
Query: 246 ttttaactgtaaatgtcaaggccacaaacgttgatgagttttccctaatgtcaacttcaa 305
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttaaactgtaaatgtcaaggcc-caaacgttgatgagttttccctaatgtcaacttcaa 459
Query: 306 gacactctaaaatcaatatcagaatataatttgtctgtcctaggctagatatctgagctc 365
||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||||
Sbjct: 458 gacactctaaaatcaatatcagaatataatttgtctgtcataggctgggtttctgagctc 399
Query: 366 aagaacatttacaaggaatttctactctaatccatttcagatgatttcacttccttggga 425
|||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||
Sbjct: 398 aagaacatttacaaggaatttctactctaatccatttccgaggatttcgcttccttggga 339
Query: 426 cttttattttacctcctggaaaca--gtctgccattcttctcagcttttctgtgacccac 483
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct: 338 cttttattttacctcct--aaagatagtctgccattcttctcagcttttctgtgacccac 281
Query: 484 tgacacttattaaacagtgtcaactcaactctctgctttgggccctcaaatccttatact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tgacacttattaaacagtgtcaactcaactctctgctttgggccctcaaatccttatact 221
Query: 544 gtgcattagacggttgaaggaagaatttttttgctctatggttacccaggaagataaggg 603
||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 220 gtgtactagacggttgaaggaagaatttgtttgctctatggttacccaggaagataaggg 161
Query: 604 aggcactgcagcaggcaacagaatcatgacactaagagttcacatctcagccccacacat 663
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gggcactccatcaggcaacagaatcatgacactaagagttcacatctcagccccacacat 101
Query: 664 aacagggagattgaactgga-tgtgtg 689
|| |||||| ||||||||| ||||||
Sbjct: 100 aatggggagactgaactggaatgtgtg 74
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_f17.g1 MSMg01no541_f17.g1 CHROMAT_FILE:
MSMg01no541_f17.g1 PHD_FILE: MSMg01no541_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:58 2005
(645 letters)
>mm_chr5_40179757_40180801
Length = 1045
Score = 1193 bits (617), Expect = 0.0
Identities = 638/645 (98%)
Strand = Plus / Plus
Query: 1 ccgacaagatgcaggaagatttcactacacacttagatctatgaaagaattaaaatataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccgacaagatgcaggaagatttcactacacacttagatctatgaaagaattaaaatataa 260
Query: 61 caagaaaccacatcatccatacaatactgaatttggaaaataatgtttattgatagtaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagaaaccacatcatccatacaatactgaatttggaaaataatgtttattgatagtaaa 320
Query: 121 atgatttttggtcattaaaaaggtgaatttacttctgagatagtaaaatgctttttggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatttttggtcattaaaaaggtgaatttacttctgagatagtaaaatgctttttggtc 380
Query: 181 attaaaaaggtgaatttacttctgagataggacatatttgcaatacaattggtattaaat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 attaaaaaggtgaatttacttctgagataggacatatttgcaatacaattggtattaagt 440
Query: 241 aaaatgtgcatactatgcaacagagtcaatacccaataatctggtatttgtgagtactta 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaatgtgcatactatgcaacagagccaatacccaataatctggtatttgtgagtactta 500
Query: 301 ttttggttatgatgctatttttttcaattttttaaatttttctttttttcttttcttttg 360
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ttttggttatgatgttatttttttcaattttttttatttttctttttttcttttcttttg 560
Query: 361 ttcatttttattggttattttatttatttacatttcaaatcttatccctccttctcagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcatttttattggttattttatttatttacatttcaaatcttatccctccttctcagtt 620
Query: 421 ttccctccacaagccccctatcctctcctccctccccctgcctctatgagggtcctcccc 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttccctctacaagccccctatcctctcctccctccccctgcctctatgagggtcctcccc 680
Query: 481 cacctacccacccacttctgcctcagcagcctagtgtttctctattctggatcatcaagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacctacccacccacttctgcctcagcagcctagtgtttctctattctggatcatcaagc 740
Query: 541 ctccacaggaccaatgatgcaagataaggcaatcctctgctacatatccagctggagata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccacaggaccaatgatgcaagataaggcaatcctctgctacatatccagctggagata 800
Query: 601 cgggtaccccttgcatactctagttggtggtttagtccctgggag 645
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 801 cgggtaccccctgcatactctagttggtggtttagtccctgggag 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
