Query= MSMg01no541_l04.b1 MSMg01no541_l04.b1 CHROMAT_FILE:
MSMg01no541_l04.b1 PHD_FILE: MSMg01no541_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:27 2005
(588 letters)
>mm_chr5_10417835_10418822
Length = 988
Score = 271 bits (140), Expect = 1e-76
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 449 agagaagaaagaaagagaggccagacagaaacacctgagaacaaagaaagagaaagggcc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 agagaagaaagaaagagaggccagacagaaacacctgagaacaaagaaagagaaagggcc 708
Query: 509 tgaaagagctggggtggcactaagtcacctgcatttggtgcaagaaaggaaatgatgtaa 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgaaagagctggggtggcactaagtcacctgcatttggtgcaagaaaggaaatgatgtaa 768
Query: 569 gccattgctgtgtccctgga 588
||||||||||||||||||||
Sbjct: 769 gccattgctgtgtccctgga 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_l04.g1 MSMg01no541_l04.g1 CHROMAT_FILE:
MSMg01no541_l04.g1 PHD_FILE: MSMg01no541_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:27 2005
(669 letters)
>mm_chr5_10446540_10447609
Length = 1070
Score = 1263 bits (653), Expect = 0.0
Identities = 665/669 (99%), Gaps = 1/669 (0%)
Strand = Plus / Minus
Query: 1 agttttattcacactagttaaatgtcatatcaagataagataacaagaataaacttcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 agttttattcacactagttaaatgtcatatcaagataagataacaagaataaacttcaaa 810
Query: 61 tgttcagcctttctaaaatatgcctgatgagaagataagttatgcaataagggattacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tgttcagcctttctaaaatatgcctgatgagaagataagttatgcaataagggattacat 750
Query: 121 agg-tttttttttaatctgtttctcttgctgcctcaccctgctactctttcccagcttga 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 749 aggttttttttttaatctgtttctcttgctgcctcaccctgctactctttcccagtttga 690
Query: 180 attgaaatgaactatcatttgttatgtggcaggcatcacatttgagactgacagagccat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 attgaaatgaactatcatttgttatgtggcaggcatcacatttgagactgacagagccat 630
Query: 240 ggtgagcaagttaaaagcttgctcccgaaggcactgttgattaacctcactctctggatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggtgagcaagttaaaagcttgctcccgaaggcactgttgattaacctcactctctggatt 570
Query: 300 gggtgttgtggccaggaaaaaagccagtggctggaaaaattgttcagctattaagggtgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gggtgttgtggccaggaaaaaagccagtggctggaaaaattgttcagctattaagggtgc 510
Query: 360 ttgctatgcaaccatgcattcagaaattggacccaaatttgaatctcagaactcacagag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttgctatgcaaccatgcattcagaaattggacccaaatttgaatctcagaactcacagag 450
Query: 420 aaagcataataaagccctataactccattccaaggaaatttgatgcattctaagatcatc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaagcataataaagccctataactccattccaaggaaatttgatgcattctaagatcatc 390
Query: 480 taaacatgtacaggcgcacgctcttgcacacatacccacactcacacagaaaataatctt 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 taaacatgtacaggtgcacgctcttgcacacatacccacactcacacagaaaataatctt 330
Query: 540 ttccacatgctgattcttgccttagagatgagggatgttaaatacgaactgaactgacag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttccacatgctgattcttgccttagagatgagggatgttaaatacgaactgaactgacag 270
Query: 600 ctatactcacagactgtgcagtagttcttacagatcaatcatggaagtcttctctatatt 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 269 ctatactcacagactgtgcagtagttcttacagatcaatcattgaagtcttctctatatt 210
Query: 660 accccatct 668
|||||||||
Sbjct: 209 accccatct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space: 698540
Effective search space used: 698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
