BAC Information

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BAC

Clone NameMSMg01-541M09
Chromosome5 (Build37)
Map Location 152,099,683 - 152,100,259
singlet/doubletsinglet
Overlap genenone
Upstream geneFry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708
Downstream geneLOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541M09.T7 (MSMg01no541_m09.b1)MSMg01-541M09.TJ (MSMg01no541_m09.g1)
ACCAG607709AG607710
length742742
length of high quality
(start - end)
597 (130 - 726)577 (82 - 658)
definitionCHROMAT_FILE: MSMg01no541_m09.b1 PHD_FILE: MSMg01no541_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:33 2005CHROMAT_FILE: MSMg01no541_m09.g1 PHD_FILE: MSMg01no541_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAATAACTCTCTTAAAGAGATCAGGAGAACACTGCTAAAGA
GTTACAAGTCCTTAAAGAAAAACAGGAAATCACTGCTAAAGAGTTACAAG
TCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATA
GAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCAT
ACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGG
CAACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCC
AGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGA
AGACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCA
AAAAGATCCTAACTAAAAACATCCAGGAAATCCAGGACACAATGAGAAGA
CCAAACCTACGGATGTTAGGAGTGGATGAGAATGAAGATTTTCAACTCAA
AGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCAAATC
TAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAAT
AGACTGGACCAGAAAAGAAATTCCTCCCGACACATAATAATCAGAACATC
AAATGCACTAAATAAAGATAGAATACTAAAAGCAGTAAGGGA
TTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAAAGGGCAGAAGAAA
TATAGTATGCACTTCAAATCTTCCCTTTATTTTTACTTCCCTGATTTCTT
ATACATTTGACACATGTAATACTTATTTTTGTTGCCACAAAACATCTCAA
TAAACGTTGGACGTAAAGTTGTATAAAAACCTAATTTTAAACCCAGACAC
TATTGCAAATGCCAACAAGAGCTTGCTGACAGAAGCCTGATAAAGCTGTC
TCCTGAGAGGCTCTGCCAGTGCCTGACAAATACAGAAGTGGATGGTTATA
GCCATCCATTGGACAGAGCACAGGGTCCCCAATGTAGGAACTAGAGAAAG
GACCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGAGGAAACAATATGA
ACTAACCAGTACCCCCAGAGCTCCCTAGGACTAAACCACCAACCAAAGAA
AACACATGGTGGGACTCGTGGCTCTAGTTGCATATGTAGCAGAAGATGGT
CTAGTTGGTCATCATTGAGGGAGGGGCCCTTGGTCCTGTGAAGGTTCTAT
GCCCCAGTATAGGGGAAATGCCTGGGCCAGGAAGCTGGAGTGGGTGGGTT
GGGGAGCAGGGGGAAGGTGAGAGGGGCTAGGGGATTTTCGGAGGGGAAAC
TATGAAAGGGGATAACATTTGAAATGTAAATAAAGAAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_m09.g1 MSMg01no541_m09.g1 CHROMAT_FILE:
MSMg01no541_m09.g1 PHD_FILE: MSMg01no541_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:33 2005
         (577 letters)



>mm_chr5_152099483_152100459
          Length = 977

 Score = 1116 bits (577), Expect = 0.0
 Identities = 577/577 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaaaagggcagaagaaatatagtatgcacttcaaatcttccctttatttttacttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaaaagggcagaagaaatatagtatgcacttcaaatcttccctttatttttacttccc 260

                                                                       
Query: 61  tgatttcttatacatttgacacatgtaatacttatttttgttgccacaaaacatctcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatttcttatacatttgacacatgtaatacttatttttgttgccacaaaacatctcaat 320

                                                                       
Query: 121 aaacgttggacgtaaagttgtataaaaacctaattttaaacccagacactattgcaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacgttggacgtaaagttgtataaaaacctaattttaaacccagacactattgcaaatg 380

                                                                       
Query: 181 ccaacaagagcttgctgacagaagcctgataaagctgtctcctgagaggctctgccagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaacaagagcttgctgacagaagcctgataaagctgtctcctgagaggctctgccagtg 440

                                                                       
Query: 241 cctgacaaatacagaagtggatggttatagccatccattggacagagcacagggtcccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgacaaatacagaagtggatggttatagccatccattggacagagcacagggtcccca 500

                                                                       
Query: 301 atgtaggaactagagaaaggacccaaggagctgaaggggtttgcagccccataggaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtaggaactagagaaaggacccaaggagctgaaggggtttgcagccccataggaggaa 560

                                                                       
Query: 361 acaatatgaactaaccagtacccccagagctccctaggactaaaccaccaaccaaagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaatatgaactaaccagtacccccagagctccctaggactaaaccaccaaccaaagaaa 620

                                                                       
Query: 421 acacatggtgggactcgtggctctagttgcatatgtagcagaagatggtctagttggtca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacatggtgggactcgtggctctagttgcatatgtagcagaagatggtctagttggtca 680

                                                                       
Query: 481 tcattgagggaggggcccttggtcctgtgaaggttctatgccccagtataggggaaatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcattgagggaggggcccttggtcctgtgaaggttctatgccccagtataggggaaatgc 740

                                                
Query: 541 ctgggccaggaagctggagtgggtgggttggggagca 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgggccaggaagctggagtgggtgggttggggagca 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)