Query= MSMg01no541_n15.b1 MSMg01no541_n15.b1 CHROMAT_FILE:
MSMg01no541_n15.b1 PHD_FILE: MSMg01no541_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:40 2005
(706 letters)
>mm_chr5_90129938_90131043
Length = 1106
Score = 1272 bits (658), Expect = 0.0
Identities = 694/712 (97%), Gaps = 10/712 (1%)
Strand = Plus / Plus
Query: 5 gaattcagtggtatatacacactgatcagccacacagagataagagaagagatttcactt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattcagtggtatatacacactgatcagccacacagagataagagaagagatttcactt 254
Query: 65 tgagcccatctaacccagaatttaataggaagaagtcaagcattagaagaaaatttccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgagcccatctaacccagaatttaataggaagaagtcaagcattagaagaaaatttccag 314
Query: 125 gagtatttttaataactagcttagacaaggctatgaagtctttaatacatgggcacctca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gagtatttttaataactagcttagacaaggctatgaagtctttaatacatgggcacctca 374
Query: 185 tttttcccttactgttttcatcctaact----------tgaactctttcccctcggctgt 234
|||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 375 tttttcccttactgttttcatcctaacttggctataaatgaactctttcccctgggctgt 434
Query: 235 gattatttcttagttgaggatttcagtcgaatcaggtgattcaatgtcatttcccatggg 294
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 435 ggttatttcttagttgaggatttcagtcgaatcaggtgatccaatgtcatttcccatggg 494
Query: 295 ggtggtgacagggctatttgccagatatcatgtctgtcacaatacctacctctcaggaga 354
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 495 ggtggtgacagggctatttgccagatatcatgtctgtcacaatacctatctctcaggaga 554
Query: 355 aaggcactcttcagcctgattcttgggaacctggaatgcctggcctctctaagtacccaa 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 555 aaggcactcttcagcctgattcttgggaacctggaatgcctggcctctctaagtacccga 614
Query: 415 ctttttatgttaccacataggcggaacccaagagtgcaagggcttggtgtcagcaaggct 474
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 615 cttcttatgttaccacataggcgggacccaagagtgcaagggcttggtgtcagcaaggct 674
Query: 475 taaacactaagtgaccatccacacagcaggcaaaagaatggtatgcactcacagtcggga 534
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 675 taaacactaagtgaccatccacacagcaggcaaaagaatgatatgcactcacagtcggga 734
Query: 535 tgttcatgcggcagccagtggtgtttggtattctggtagtcaaagtgtgagttacgctgt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgttcatgcggcagccagtggtgtttggtattctggtagtcaaagtgtgagttacgctgt 794
Query: 595 tggcactgctgggccctgaagtcctcaaagtgcttttggcattcttctgtattacaaagc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tggcactgctgggccctgaagtcctcaaagtgcttttggcattcttctgtattacaaagc 854
Query: 655 tggtactcaaaattaacaccagggcagtcctgcccaccattgatgggcctag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tggtactcaaaattaacaccagggcagtcctgcccaccattgatgggcctag 906
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no541_n15.g1 MSMg01no541_n15.g1 CHROMAT_FILE:
MSMg01no541_n15.g1 PHD_FILE: MSMg01no541_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:40 2005
(624 letters)
>mm_chr5_90279998_90281022
Length = 1025
Score = 1154 bits (597), Expect = 0.0
Identities = 618/625 (98%), Gaps = 1/625 (0%)
Strand = Plus / Minus
Query: 1 acttttgtatttgagcggcattatcaaggtgggctaggtggggcgggggtggtgtagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 acttttgtatttgagcggcattatcaaggtgggctaggtggggcgggggtggtgtagcaa 766
Query: 61 gtttctgtttatctaacagggttttctaatgccaatttaaaatgtgcaggcaatttctgg 120
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 765 gtttctgttgatctaacagggttttctaatgccaatttaaagtgtgcaggcaatttctgg 706
Query: 121 aaggcctactcctccctctggcggctcccctaaaagtagatgtgtatgggacaagagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aaggcctactcctccctctggcggctcccctaaaagtagatgtgtatgggacaagagaat 646
Query: 181 tttgttgcctcttgctcaggtgtcatgtgaccctagcaggtcctgtcctaaggtaagctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tttgttgcctcttgctcaggtgtcatgtgaccctagcaggtcctgtcctaaggtaagctc 586
Query: 241 cagatcatgcaactcctgtgagtacctgagccaacgttagcaatgcaagtacagtgggat 300
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 585 cagatcatgcaactcctgtgagtacctgagccaacgtcagcaatgcaagtactgtgggat 526
Query: 301 gcgttttccttagcgctgcctgtgaatcaacgggctttctacatggaggtttgactttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcgttttccttagcgctgcctgtgaatcaacgggctttctacatggaggtttgactttta 466
Query: 361 gggtaatacctcctttggaaaatcaggatatttgatcttgcttagagtctgccagtattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gggtaatacctcctttggaaaatcaggatatttgatcttgcttagagtctgccagtattt 406
Query: 421 caagcttttctgaccggctttgtacagttcttcaagttgcatacctggctctgaggaggg 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 405 caagcttttctgaccggctttgtacagttcttcaagttgcgtacctggctctgaggaggg 346
Query: 481 agttcactggctgccagagcaagagtacagacctaacgtagcggtgtgcatcccgataaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agttcactggctgccagagcaagagtacagacctaacgtagcggtgtgcatcccgataaa 286
Query: 541 gttaagtcaccgtgagatctccatttcatcagct-gtgcttcactgctaactttggcttc 599
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 285 gttaagtcaccgtgagatctctatttcatcagcttgtgcttcactgctaactttggcttc 226
Query: 600 aactgtgggaccacatctagtctta 624
|||||||||||||||||||||||||
Sbjct: 225 aactgtgggaccacatctagtctta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space: 623210
Effective search space used: 623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
