BAC Information

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BAC

Clone NameMSMg01-542B06
Chromosome5 (Build37)
Map Location 22,865,317 - 23,037,080
singlet/doubletdoublet
Overlap geneLOC100042082, 4930580E04Rik, BC050254, Srpk2
Upstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542B06.T7 (MSMg01no542_b06.b1)MSMg01-542B06.TJ (MSMg01no542_b06.g1)
ACCAG607941AG607942
length773745
length of high quality
(start - end)		680 (46 - 725)576 (80 - 655)
definitionCHROMAT_FILE: MSMg01no542_b06.b1 PHD_FILE: MSMg01no542_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:59 2005CHROMAT_FILE: MSMg01no542_b06.g1 PHD_FILE: MSMg01no542_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:59 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(22,865,317 - 22,865,992)(23,036,664 - 23,037,080)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGCAGAACTATTAAGCATAAATAAATTTTTGGCCTCAGGCCAGA
TTTTTCTTTTTTATTTATTTATTTATTTATTTTTTGTTAATAAAAGGGAA
GAGATGTAGTCTCCCCTCCCCCAGCCTGAAACCTGCTTGCTCAGGGGTGG
AGCTTCCCGCTCAATCGTTCTGCCATGCCCACTGCTGGAACCTGCCACTT
TGTTGTTCGGAGCCGTGCACGTGGTCACCCTGCTATTGGACTCCAAGATT
AATTGGCAGGAATCGGGCCCCTTCCCCTGCTTTATAATTGCGTGCGGAAC
AGTAAAATTGAGCTTTGATCAGAATGACTGTCTTAGCTGCATTTCTTTAT
CTCGCCACTTAGCCCCTCTTCTCTTCCAGGTTTCCAAAATGCCTTTCCAG
GCTAGAACCCATGTTGTGATCTGCTGGCCGGACACAACAGTGACTGAGCA
GTTAAGAGCACTTGTTGCTCTTGGCAGACGACCTGGCTTCTAGTCCTAGC
ACCACATGGAGGCTGACCGCCATCTGTAACTCCTCTTCTAACTATGAAGA
TACTGTGCATACATTGGCATATACACAATCACAGGCAAAGCATTCAGGTT
CAACATAAATGGCTAGAAAAGTTGTTGGCATTTTTATTAATTTTCATGGG
CTGTGGTCATTTACCACCTTGTCAGGATGCTAGAGCCCAACCCTNCAGGG
CTGGTTTTTTCCTTTTTCTATGN

NNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCTCCTCTGAAAAATAAA
GAAGTGGAAGTTTATTTTAAGCACCTTGTCTGATAACAGTGAGTAGATAT
TTGAGGAACAGGTTAAGTCCCAAGGTTGAGTTGTTTTCATTGCCTGTGCG
GGGGTGGGGGTGGGGGTCTCTTTAATGACTACTGACTCCTTCTCAGTACA
TGGGTGAGAACATCAGGGAAGCAACTTACATTGGTTGCCTTTTAAATTTA
TTCCTTGATAAGTTTATATATGTATACTTTTATAATGCATATTGATAATA
TCCACCTCCCATTCTCTGCTTACCCACTTCCTGTGCCCTCTGTAACCCTT
CTTCCCAACACATCTGCCTTCTATGCTCATGTTTTAAAACAACAACAACA
ACTACTATTAAGTTTAATTAGGGTTGCTTGTATGTGCATAGGTGTGGGGG
ATTTAATGGGTAATAGGCACCTTACCAGTGGCTTTGCCACTGAAGAGAAA
TTACTTCAGCTCCCCCAATAGCCGTCCCACTGCGGATGACTTAACATGCC
TATTTCTGTCCATGCTGGGATGCTGTGGGGTTACGGGCATAACTGAGTTT
CAGTTGTTGTGAGGTCAGAAGTCCAGAGAACAGTGCTACAGGGCAGTGGT
GCCACACGCCTTTAATCCCAGCACTCGGGAGGTAGAGGCAGGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_b06.b1 MSMg01no542_b06.b1 CHROMAT_FILE:
MSMg01no542_b06.b1 PHD_FILE: MSMg01no542_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:59 2005
         (680 letters)



>mm_chr5_22865113_22866192
          Length = 1080

 Score = 1307 bits (676), Expect = 0.0
 Identities = 676/676 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggcagaactattaagcataaataaatttttggcctcaggccagatttttcttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggcagaactattaagcataaataaatttttggcctcaggccagatttttcttt 264

                                                                       
Query: 65  tttatttatttatttatttattttttgttaataaaagggaagagatgtagtctcccctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttatttatttatttatttattttttgttaataaaagggaagagatgtagtctcccctcc 324

                                                                       
Query: 125 cccagcctgaaacctgcttgctcaggggtggagcttcccgctcaatcgttctgccatgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccagcctgaaacctgcttgctcaggggtggagcttcccgctcaatcgttctgccatgcc 384

                                                                       
Query: 185 cactgctggaacctgccactttgttgttcggagccgtgcacgtggtcaccctgctattgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cactgctggaacctgccactttgttgttcggagccgtgcacgtggtcaccctgctattgg 444

                                                                       
Query: 245 actccaagattaattggcaggaatcgggccccttcccctgctttataattgcgtgcggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actccaagattaattggcaggaatcgggccccttcccctgctttataattgcgtgcggaa 504

                                                                       
Query: 305 cagtaaaattgagctttgatcagaatgactgtcttagctgcatttctttatctcgccact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagtaaaattgagctttgatcagaatgactgtcttagctgcatttctttatctcgccact 564

                                                                       
Query: 365 tagcccctcttctcttccaggtttccaaaatgcctttccaggctagaacccatgttgtga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagcccctcttctcttccaggtttccaaaatgcctttccaggctagaacccatgttgtga 624

                                                                       
Query: 425 tctgctggccggacacaacagtgactgagcagttaagagcacttgttgctcttggcagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctgctggccggacacaacagtgactgagcagttaagagcacttgttgctcttggcagac 684

                                                                       
Query: 485 gacctggcttctagtcctagcaccacatggaggctgaccgccatctgtaactcctcttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gacctggcttctagtcctagcaccacatggaggctgaccgccatctgtaactcctcttct 744

                                                                       
Query: 545 aactatgaagatactgtgcatacattggcatatacacaatcacaggcaaagcattcaggt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aactatgaagatactgtgcatacattggcatatacacaatcacaggcaaagcattcaggt 804

                                                                       
Query: 605 tcaacataaatggctagaaaagttgttggcatttttattaattttcatgggctgtggtca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcaacataaatggctagaaaagttgttggcatttttattaattttcatgggctgtggtca 864

                           
Query: 665 tttaccaccttgtcag 680
           ||||||||||||||||
Sbjct: 865 tttaccaccttgtcag 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_b06.g1 MSMg01no542_b06.g1 CHROMAT_FILE:
MSMg01no542_b06.g1 PHD_FILE: MSMg01no542_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:59 2005
         (576 letters)



>mm_chr5_23036664_23037639
          Length = 976

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccacctcctctgaaaaataaagaagtggaagtttattttaagcaccttgtctgataacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ccacctcctctgaaaaataaagaagtggaagtttattttaagcaccttgtctgataacag 358

                                                                       
Query: 61  tgagtagatatttgaggaacaggttaagtcccaaggttgagttgttttcattgcctgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgagtagatatttgaggaacaggttaagtcccaaggttgagttgttttcattgcctgtgc 298

                                                                       
Query: 121 gggggtgggggtgggggtctctttaatgactactgactccttctcagtacatgggtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gggggtgggggtgggggtctctttaatgactactgactccttctcagtacatgggtgaga 238

                                                                       
Query: 181 acatcagggaagcaacttacattggttgccttttaaatttattccttgataagtttatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 acatcagggaagcaacttacattggttgccttttaaatttattccttgataagtttatat 178

                                                                       
Query: 241 atgtatacttttataatgcatattgataatatccacctcccattctctgcttacccactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 atgtatacttttataatgcatattgataatatccacctcccattctctgcttacccactt 118

                                                                       
Query: 301 cctgtgccctctgtaacccttcttcccaacacatctgccttctatgctcatgttttaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cctgtgccctctgtaacccttcttcccaacacatctgccttctatgctcatgttttaaaa 58

                                                                    
Query: 361 caacaacaacaactactattaagtttaattagggttgcttgtatgtgcataggtgtg 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  caacaacaacaactactattaagtttaattagggttgcttgtatgtgcataggtgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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