CCAAAATTTTCNCCCCTATACAACTCCTATATTTCCAGATCCGCGGAATT
CATTCATTAACTACCAAAACAAGTGAAGCTCAAATTTCAAAGAGCTCTTG
CAAGATAACCACACCATTTTCCTTTGTCTGGCTGCTCGGGTCATAAAAAG
CAAAGGAAAGTGAAGAAATAAGGGCACACTTTANATAAATAAAACAATGG
TATCTTCTTTCCTCTCTCTTGGTCNATTACCGGTTTTCATCNTACAATTT
TCTTGGCTCCGGGGAGCGGGCTGGGGGGGGGGGGCGCTGGGGGGGGGGGG
GGGGGGGCAGGGGGGGGGGGGGCGGGGGGGCGGGGGTGGGAATNAATTNA
TTTTTAAAAAANAAACAAATTTTTACTTCCAAAAAAACTGGGGTAAAAAA
GGGTTGCCCCCCACAAAAAATTTTTTTTGAAAAANAAAAATTTTTTTTTC
TATATTCCCCCAAAAAAAAAAAAATTTTCCCCCACAGGTTTTTTTTTAAA
AAAAAAAAATTACCCTTTAAAAAACCCCCCCCCTCCTCCCCCCAAAAAAA
AAATTTCCCCTTTTAAAAATTTTTCTTTTTTATTTTTTAAAAAAACCCCT
TCTTTTTTNNNNNNTTTTTTNNTTTNTTTTNGGCGTTTTTTTTTTTGTTT
GTGTTTNTGGNTCTCNNCCTTCCCCTTTCTCNNTTNCCTNNCCTTTCCTC
CTCTTTTNTTTTTTTTCCTTCCCTTNTCCTCCCTTCTCTCTTTCCCCTAC
CTTCCCCCTCCTCCCCCTTCCCTTCTTTCTCCTTTTTTTCCCTTCTCTTT
CTTCTTTTTTCCCCCTTCCCTTTTTCCTTCTCCTCTTTTTCGCATGGGTG
GTAGGTG

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCTTAGAGATAACCTGTTGTTGGGTATG
GTGGCACATTCTTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATC
TCTGTGAGTTAAAGGGCAGGCCGCTCTACAGAGTGAGTTTCAGGACTACC
AGGGCTGCAAAGAAACCCTGTCTTTGTAAAAAACAAAATGGAGGAGAGAG
AGAGAGAGAGAGAGAGAAAGAGAGAGAGGAGAGAGAGGCAGAGACAGAGA
GACAGACACAGACAGAGACAGAGAGAGAGACAGACACAGAGAGAGACAGA
GAGACAGCGAGAGACAGAGACAGAGAGACAGAGAGAGCCAGACACAGAGA
GAGATAGAGACAGAGAGACAGACACAGAGAGAGACAGAGAGAGAGACAGA
GAGAGAGAGAGATAGAGAGAGATAGAGAGAGAGAAAACCTCTGAGTTGTT
ATGAAGTTTATTTCCTTTTTTGCCTGTCATCACTACCACTGCCTGCAGAT
CTCTTCTTGGAATGATTCCTTTTTATTAGCCATAGAAATAGTTTAATTAT
TTTAATATAAAATGTACTTTATAGAATGACTATGGGATTGTTTGCTAATA
TTACACCCATTTTCTTGTTTTCCAGCAATTATTCAGAGTTCATAATANAC
ACAGAGAGATGGCATCAAATCTATTTTTATTTATAAACTACCTTCCAAAA
CACCATTTTGTN

Query= MSMg01no542_c10.g1 MSMg01no542_c10.g1 CHROMAT_FILE:
MSMg01no542_c10.g1 PHD_FILE: MSMg01no542_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:05 2005
         (606 letters)



>mm_chr5_9381063_9382068
          Length = 1006

 Score =  571 bits (295), Expect = e-167
 Identities = 414/489 (84%), Gaps = 63/489 (12%)
 Strand = Plus / Plus

                                                                       
Query: 176 agagagagagagagagagagaaagagagagaggagagagaggcagagacagagagacaga 235
           |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 323 agagagagagagagagggagagaga-agagaggagagagaggcagagacagagagacaga 381

                                                                       
Query: 236 cacaga------cagagacagagag--------agagacagacacagagagagacagaga 281
           ||||||      |||||||||||||        ||||| ||||| |||||||||||||||
Sbjct: 382 cacagagagaggcagagacagagagacagacacagagagagacagagagagagacagaga 441

                                                                       
Query: 282 gacagcgagagacagagacagagag--------acagagagagccagacacag------- 326
           ||||| |||||||||| ||||||||        |||||||||  |||||||||       
Sbjct: 442 gacagagagagacagacacagagagagatagaaacagagaga--cagacacagagagaga 499

                                                                       
Query: 327 -agagagatagagacagagagacag------------------acacagagagagacaga 367
            ||||||| ||||||||||||||||                  ||||||||||||| |||
Sbjct: 500 cagagagagagagacagagagacagagagagagacagacacacacacagagagagataga 559

                                                                       
Query: 368 gagagag------acagagagagag----agagatagagagagatagagagagagaaaac 417
           |||||||      ||||||||||||    ||||| ||||||||||||||||||||  |||
Sbjct: 560 gagagagacagacacagagagagagagacagagagagagagagatagagagagag--aac 617

                                                                       
Query: 418 ctctgagttgttatgaagtttatttccttttttgcctgtcatcactaccactgcctgcag 477
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctctgagttgctatgaagtttatttccttttttgcctgtcatcactaccactgcctgcag 677

                                                                       
Query: 478 atctcttcttggaatgattcctttttattagccatagaaatagtttaattattttaatat 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 atctcttcttggaatgattcctttttattagccatagaaatagtttaattattttaatat 737

                                                                       
Query: 538 aaaatgtactttatagaatgactatgggattgtttgctaatattacacccattttcttgt 597
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agaatgtaccttatagaatgactatgggattgtttgctaatattacacccattttcttgt 797

                    
Query: 598 tttccagca 606
           |||||||||
Sbjct: 798 tttccagca 806



 Score =  369 bits (191), Expect = e-106
 Identities = 283/335 (84%), Gaps = 41/335 (12%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttcaggactaccagggctgcaaagaaaccctgtctttgtaaaaaacaaaatggaggagag 177
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1   ttcaggactaccagggctacaaagaaaccctgtcttagtaaaaaacaaaatggaggagag 60

                                                                       
Query: 178 agagagagagagagagagaaagagagag-----aggagagagaggcagagacagagagac 232
           ||||||||||||||||||| ||||||||     |||||||||||||||||||||||||||
Sbjct: 61  agagagagagagagagagagagagagaggatagaggagagagaggcagagacagagagac 120

                                                                       
Query: 233 agacacagacagagacagaga--gagagacagacacagagagagacagagaga----cag 286
           ||||||||| |||| ||||||  ||||||||||||||||||||||||||||||    |||
Sbjct: 121 agacacagagagaggcagagacagagagacagacacagagagagacagagagagagacag 180

                                                                       
Query: 287 -----c-----gagagacagagacagagaga--cagagagag-----c-----------c 318
                |     |||||||||| |||||||||  |||||||||     |           |
Sbjct: 181 agagacacagagagagacagacacagagagagacagagagagagagacagagagagagac 240

                                                                       
Query: 319 agacacagagagagatagagacagagagacagacacagagagagacagagagagagacag 378
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 241 agacacagagagagatagagacagagagacagaca--gagagagacagagagagagacag 298

                                              
Query: 379 agagagagagagatagagagagatagagagagaga 413
           ||||| ||||||| ||| ||| | |||||||||||
Sbjct: 299 agagacagagagagagacagacacagagagagaga 333


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 336
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 4
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)