Query= MSMg01no542_d13.b1 MSMg01no542_d13.b1 CHROMAT_FILE:
MSMg01no542_d13.b1 PHD_FILE: MSMg01no542_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:11 2005
(681 letters)
>mm_chr5_47734302_47735385
Length = 1084
Score = 1036 bits (536), Expect = 0.0
Identities = 625/682 (91%), Gaps = 45/682 (6%)
Strand = Plus / Minus
Query: 4 ggaattcattgctgggtaaggtagccatgcctagcaactttacacaaacctcaggagcaa 63
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 668 ggaattcattgctgggtaaggtagccatgcccaggaactttacacaaacctcaggagcaa 609
Query: 64 tattgattaactatgctatattcgtttttttt----aattaataaaagatctttcatata 119
|||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||
Sbjct: 608 tattgattaactatgctatattcgtttttttttttaaattaataacagatcttccattta 549
Query: 120 gtgacattatagtgtctttaatttttaatatccaatattttataaaatcaagacattatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtgacattatagtgtctttaatttttaatatccaatattttataaaatcaagacattatt 489
Query: 180 gagtggtcaggaaagagttttatcaacattttacttttttccaaagtatggtctaagtac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gagtggtcaggaaagagttttatcaacattttacttttttccaaagtatggtctaagtac 429
Query: 240 tgattatacccatagtgagctatattttcaattcaggcatataggaccacaattagttgg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgattatacccatagtgagctatattttcaattcaggcatataggaccacaattagttgg 369
Query: 300 ttattctgacaatacaacatgtgtatttttgattcttaattgaaagcattaaaaaatgga 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 368 ttattctgacaatacaacatgtgtatttttgattcttaattgaaagcatt-aaaaatgga 310
Query: 360 ttgtccagctgataaaataattaaaaatatagttgagattattgagacctcattttgtac 419
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 309 ttgtctagctgataaaataattaacaatatagttgagattattgagacctcattttgtac 250
Query: 420 tatgcagtgtttaaacttatgtagattaaaatatattgaaggataacaactgactatgag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tatgcagtgtttaaacttatgtagattaaaatatattgaaggataacaactgactatgag 190
Query: 480 tctcttatgatctggtcaacaactcctgtcccattgtcctgtaactaactccaataaagc 539
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 189 tctcttatgatgtggtcaacaactcctgtcctattgtcctgtaactaactccaataaagc 130
Query: 540 tgaaagattcaacaacaacaaaaatattattaagattataatataattacattgtttctc 599
||||| |||||||||||||||||||||| |||||
Sbjct: 129 tgaaaaattcaacaacaacaaaaatatttttaag-------------------------- 96
Query: 600 ttcattcattttctcaacccacaggttgagaacgacaggcttagtggctgagtgtgcttg 659
||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 95 -------attttct-------caggttgagaacgacaggcttagtggctgagtgtacttg 50
Query: 660 aagaatgtacattctaatctga 681
||||||||||||||||||||||
Sbjct: 49 aagaatgtacattctaatctga 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1084
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1074
Effective search space: 720654
Effective search space used: 720654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_d13.g1 MSMg01no542_d13.g1 CHROMAT_FILE:
MSMg01no542_d13.g1 PHD_FILE: MSMg01no542_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:11 2005
(660 letters)
>mm_chr5_47577220_47578279
Length = 1060
Score = 1156 bits (598), Expect = 0.0
Identities = 647/672 (96%), Gaps = 16/672 (2%)
Strand = Plus / Plus
Query: 1 tttagggggattggcaagcagcagattggggaaaagggactcttctgatagtcatgatga 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tttaggaggattggcaagcagcagattggggaaaagggactcttctgatagtcatgatga 251
Query: 61 caacatgcttctgggaatgcaggttgctaaggacaggtaaatggagta---------tgt 111
||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 252 caacatgcttctgggaatgcaggttgcaaaggacaggtaaatggagtacatagggaatgt 311
Query: 112 gttggagctcagtccttctagacttaattggggatccagcaagcaagtgattgaagggtg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gttggagctcagtccttctagacttaattggggatccagcaagcaagtgattgaagggtg 371
Query: 172 gtggacatcccgggtgttaagccagcctccagggatacatcaaagataatgggtcataac 231
|||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 372 gtgggcatcccgggtgttaagccggcctccagggatgcatcaaagataatgggtcataac 431
Query: 232 atgggctatagttataacaacaaattaataaatgtatagaacatcttgctaaaagcatta 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atgggctatagttataacaacaaattaataaatgtatagaacatcttgctaaaagcatta 491
Query: 292 taatgtctttttt---aaaaaaattgttttctataactgtctcttgtgaggctatgccag 348
||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 492 taaagtctttttttttaaa----ttgttttctataactgtctcttgtgaggctatgccag 547
Query: 349 ggcctggcaaatacagaagtggatgttcacagtcatctattggatggaacacagggtccc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ggcctggcaaatacagaagtggatgttcacagtcatctattggatggaacacagggtccc 607
Query: 409 caatgaaggagctagagaaagtacccaaggagctgaaggggttttcagccctatagaaga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 caatgaaggagctagagaaagtacccaaggagctgaaggggttttcagccctatagaaga 667
Query: 469 aacaacaatatgaactaaccagtaccccaagagcttgtgtctctagctgcttatgtagca 528
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 668 aacaacaatatgaactaaccagtacctcaagagcttgtgtctctagctgcttatgtagca 727
Query: 529 gaggatggcctagtcagccatcagtgggaggagaggcccttggtcttgtgaagatgttag 588
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gaggatggcctagtcggccatcagtgggaggagaggcccttggtcttgtgaagatgttag 787
Query: 589 gccccagtataggggaaagctaaggctaggaagcaggagtgggtgggttgaagagcaggg 648
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 788 gccccagtataggggaaagctagggctaggaagcaggagtgggtgggttgaagagcaggg 847
Query: 649 ggcggggggagg 660
||||||||||||
Sbjct: 848 ggcggggggagg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
