Query= MSMg01no542_o15.b1 MSMg01no542_o15.b1 CHROMAT_FILE:
MSMg01no542_o15.b1 PHD_FILE: MSMg01no542_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:06 2005
(700 letters)
>mm_chr5_127115732_127116831
Length = 1100
Score = 1205 bits (623), Expect = 0.0
Identities = 688/725 (94%), Gaps = 31/725 (4%)
Strand = Plus / Minus
Query: 4 ggaattccaagg-ggg-tattcatttaaagaaaaaaaatgttgttattatcttagaagaa 61
|||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 ggaattccaaggagggaaatt-atttaaagaaaaaaaatgttgttattatcttagaagaa 1028
Query: 62 aatcttactgtagtagatgtccctggaaaggcagggctacaaaacaatggtatatatata 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 aatcttactgtagtagatgtccctggaaaggcagggctacaaaacaatggtatatatata 968
Query: 122 acaatcttcatc------------------------tgtgtgtgtgtgtgtgtgtgtgtg 157
|||||||||||| ||||||||||||||||||||||||
Sbjct: 967 acaatcttcatctttctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 908
Query: 158 tgtgtgtaatctgcccaaagatgccctcaagattacaatgtagctaaggatacatcaaat 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tgtgtgtaatctgcccaaagatgccctcaagattacaatgtagctaaggatacatcaaat 848
Query: 218 tcatagttctcaaacctactcaaacactctatggactgagccatatgctca-ccctccct 276
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct: 847 tcatagttctcaaacctactcaaacattctatggactgagccatatgctcagccc-ccct 789
Query: 277 ctgtatctttcattcctagtagttcttcactgagtttagagtcacctgctcacccactga 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ctgtatctttcattcctagtagttcttcactgagtttagagtcacctgctcacccactga 729
Query: 337 acttaaacataagaagtactggtaaatctgtcctagctattggttatgctcaaaggcttt 396
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 728 acttaaacataagaagtactggtaaatctgtcctagttattggttatgctcaaaggcttt 669
Query: 397 cattcccacttaattggacattctagaaaagatgctgtgagctgggaatattgttaaagt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cattcccacttaattggacattctagaaaagatgctgtgagctgggaatattgttaaagt 609
Query: 457 aataagttcactcaccatgtttttattgcctttaaatcacacacaggtaccctgagtaaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aataagttcactcaccatgtttttattgcctttaaatcacacacaggtaccctgagtaaa 549
Query: 517 gcttcatcaaattttagtttcttctaaaattaagaagaacagcattgaaataagaagaaa 576
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcttcatcaaattttagtttcttttaaaattaagaagaacagcattgaaataagaagaaa 489
Query: 577 aacaagaacaatagtcattggttagtccaatttttcaggccaacatgacaaagttccgcc 636
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 488 aacaagaacaatagtcattggttagtccaatttttcaggccagcatgacaaagttccgcc 429
Query: 637 atgcttcaagaaggcagtggtcttgaatcagaaagaccaagtt-ttctgctctggacagg 695
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 428 atgcttgaagaaggcagtggtcttgaatcagaaagaccaagttctt-tgctctggacagg 370
Query: 696 cagat 700
|||||
Sbjct: 369 cagat 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_o15.g1 MSMg01no542_o15.g1 CHROMAT_FILE:
MSMg01no542_o15.g1 PHD_FILE: MSMg01no542_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:06 2005
(673 letters)
>mm_chr5_126979358_126980430
Length = 1073
Score = 1286 bits (665), Expect = 0.0
Identities = 671/673 (99%)
Strand = Plus / Plus
Query: 1 catctaggggaattccaaaaccttctatcaaggagactctcatcaaggtacaggatgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctaggggaattccaaaaccttctatcaaggagactctcatcaaggtacaggatgctc 260
Query: 61 ttaaaggggatcaaacattccatgctgcaagggagcttgtgaagatgggaaagtgaatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaggggatcaaacattccatgctgcaagggagcttgtgaagatgggaaagtgaatac 320
Query: 121 ctccaaagctctgggagcttctggggtggactcaggttgtatgggagcagtcaggccatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccaaagctctgggagcttctggggtggactcaggttgtatgggagcagtcaggccatg 380
Query: 181 tgggttttgtcttataaattgttaagttaaacagacaaaaggttttagtccaaggaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggttttgtcttataaattgttaagttaaacagacaaaaggttttagtccaaggaaacc 440
Query: 241 tgttctgcatccctaaggtgagaatctgttgagcatttcaacagatgcccagtgtatcat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tgttctgcatccctaaggtgagaatctgttgagcatttcaacagatgcccagcgtatcat 500
Query: 301 gcagtggggccttagtcagtagtgattctcatgtctggtttgtccctgttgcttgacaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagtggggccttagtcagtagtgattctcatgtctggtttgtccctgttgcttgacaat 560
Query: 361 gactaacaaagagaagcctactatggtttttttcagttcctggtacgtaccacaatgatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactaacaaagagaagcctactatggtttttttcagttcctggtacgtaccacaatgatt 620
Query: 421 ctgcatagggtttaatagtcaggtaacttacaaatgatagaaaagacagggtaactttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 ctgcatagggtttaatagtcaggtaacttacaaatgatagaaaagacagggaaactttaa 680
Query: 481 gaaaacttctagtacagctaacattccaaaccttcaaatatagctgacgttccaaagcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaacttctagtacagctaacattccaaaccttcaaatatagctgacgttccaaagcca 740
Query: 541 gccagggaggctaatctcactgagggctctgatcattgtttgcaaataacttggctctct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gccagggaggctaatctcactgagggctctgatcattgtttgcaaataacttggctctct 800
Query: 601 tcactgcccagccctgggtccctctgcccaaagtgcccactcaagaaggcattcatcatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcactgcccagccctgggtccctctgcccaaagtgcccactcaagaaggcattcatcatt 860
Query: 661 aaagcctcttagc 673
|||||||||||||
Sbjct: 861 aaagcctcttagc 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
