BAC Information

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BAC

Clone NameMSMg01-543A09
Chromosome5 (Build37)
Map Location 37,131,008 - 37,296,270
singlet/doubletdoublet
Overlap geneCno, Mrfap1, Man2b2, Ppp2r2c
Upstream geneAblim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825
Downstream geneWfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543A09.T7 (MSMg01no543_a09.b1)MSMg01-543A09.TJ (MSMg01no543_a09.g1)
ACCAG608658AG608659
length787749
length of high quality
(start - end)
113 (78 - 190)579 (76 - 654)
definitionCHROMAT_FILE: MSMg01no543_a09.b1 PHD_FILE: MSMg01no543_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:15 2005CHROMAT_FILE: MSMg01no543_a09.g1 PHD_FILE: MSMg01no543_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,296,162 - 37,296,270)(37,131,008 - 37,131,586)
sequence
TGATCATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACGGGTTTTTCCTGGCTCAAGAGGCAAGAGTGCTTTTTGA
AAGGGCCATAGAAGAGCAAAACAGAAAAGTATGCAAGAGGGATTCCAGAT
CTCCGAGTTTCCTGGCCCTTTACAGTCAGACACAGAGACAGATCGCAGCT
CAGGGCAAGCCTCAGCCTGCAGCTGGGAGAGCATAGTCAGGTGTAACCGC
AGAAGAACTGCACAGAACCACCCTGTGCTTCGGCGGGGGGACAGCAAGGT
CGGTGTTTCAACACTACACGTGGTCCTTGACTCTCGCTAATCTTTTTGGA
TGGGTCAATCTCCTCTACTGCTCGTCTAGCAGATACTCTGCTCCAACCTC
TGTCTCATTGGCCACCCATCCTCCTTGCCGTCCCCTGTTTTCCTATGTAT
TCTCCTTTCTCTCTTACATCCTTTTGTTGTTCTAATTCTAATTACCGACT
TCCAATATGTTATCTCCTTGCCTAAAATCCTTCTATTTCTCTCGCCCCGG
CTTTTCCGGAGTACCCCATAACATTTGCTCTTTCCCATGCTTCTTCTGAA
ACTTCTATTTTTTTCCTTCCTTCGTCTAAGTTGCCGTTCTCCCGCACGTG
AATCCTGCCCACACTTTTTCCTTGGTTTCTTTTCTCTCTCCCCCCTTTCT
TTTGTTTCTTCTTCACAGTCCTTCCCCTCCTTCTCCCCCTTATTTGTTGT
CTGGCCCCCTTCTTTCTCCTTTGTTTTTTCCTCGCGC
NAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCCCTCTAGCTAAGCATCTACTTG
GAATGAGAGGGACTAGTAGTAGCTGCTGGTCAGGAACACTGACCCAGCGT
CGGCCATACAGGAAGATGAGAGCCGGAGAAAGGACTTCTCAGCCCAGCAC
AGGATTGCTCAGCATGCCCTCAGGAGGCTGTGAACTCCTGGATTCTCCTT
CTTTCTTTCCAGAGGAGGAAACTGAGGTCCAGGAAGCTGGATAATTGGCT
TAAGACCTCTTTGCTGGGCAATGCTACACCATACTGCCCCTTGGTGGCCA
TAGGTAGCATGTTTAGTGCACAAGGCCAGCCCTTCTAAGGCATTAGTGGA
GCTAGGCCCTCCTGGGCTAGTGGATAATCCATAGCCTTGGCAGAGTCCTG
GGTGGTGTCTGCTGTCGGTGCTCATGAAAAGTGGGGTCTGCACCAGGTAA
GCTCTGTGATTCCTCACCTGGTTCTCTCCATCAAAATCCCCACACAACGG
ACTGTACAGACAGGAGAGGCTGAGCTGAACACGGGCGCTTTTTATCCACT
CCTACCTGATCACGGCTCCTTCCTTTCCTCTTTCCTGTTGTAGTAAACTT
CCAACCCCAATAAGTCTATGCAAAAACACACAACTGAGTTATTATGTTTA
TAAGTTGTATGTCCAGATTGGGCAGATCTATCACTATACTAAGCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_a09.b1 MSMg01no543_a09.b1 CHROMAT_FILE:
MSMg01no543_a09.b1 PHD_FILE: MSMg01no543_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:15 2005
         (113 letters)



>mm_chr5_37295958_37296470
          Length = 513

 Score =  211 bits (109), Expect = 1e-59
 Identities = 109/109 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   aggcaagagtgctttttgaaagggccatagaagagcaaaacagaaaagtatgcaagaggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggcaagagtgctttttgaaagggccatagaagagcaaaacagaaaagtatgcaagaggg 254

                                                            
Query: 65  attccagatctccgagtttcctggccctttacagtcagacacagagaca 113
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attccagatctccgagtttcctggccctttacagtcagacacagagaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 513
Length adjustment: 8
Effective length of query: 105
Effective length of database: 505
Effective search space:    53025
Effective search space used:    53025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no543_a09.g1 MSMg01no543_a09.g1 CHROMAT_FILE:
MSMg01no543_a09.g1 PHD_FILE: MSMg01no543_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:15 2005
         (579 letters)



>mm_chr5_37130808_37131786
          Length = 979

 Score = 1081 bits (559), Expect = 0.0
 Identities = 574/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccctctagctaagcatctacttggaatgagagggactagtagtagctgctggtcagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccctctagctaagcatctacttggaatgagagggactagtagtagctgctggtcagga 260

                                                                       
Query: 61  acactgacccagcgtcggccatacaggaagatgagagccggagaaaggacttctcagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactgacccagcgtcggccatacaggaagatgagagccggagaaaggacttctcagccc 320

                                                                       
Query: 121 agcacaggattgctcagcatgccctcaggaggctgtgaactcctggattctccttctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcacaggattgctcagcatgccctcaggaggctgtgaactcctggattctccttctttc 380

                                                                       
Query: 181 tttccagaggaggaaactgaggtccaggaagctggataattggcttaagacctctttgct 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 tttccagaggaggaaactgaggtccagggagctggataattggcttaagacctctttgct 440

                                                                       
Query: 241 gggcaatgctacaccatactgccccttggtggccataggtagcatgtttagtgcacaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcaatgctacaccatactgccccttggtggccataggtagcatgtttagtgcacaagg 500

                                                                       
Query: 301 ccagcccttctaaggcattagtggagctaggccctcctgggctagtggataatccatagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagcccttctaaggcattagtggagctaggccctcctgggctagtggataatccatagc 560

                                                                       
Query: 361 cttggcagagtcctgggtggtgtctgctgtcggtgctcatgaaaagtggggtctgcacca 420
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtcagagtcctgggtggtgtttgctgtcggtgctcatgaaaagtggggtctgcacca 620

                                                                       
Query: 421 ggtaagctctgtgattcctcacctggttctctccatcaaaatccccacacaacggactgt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtaagctctgtgattcctcacctagttctctccatcaaaatccccacacaacggactgt 680

                                                                       
Query: 481 acagacaggagaggctgagctgaacacgggcgctttttatccactcctacctgatcacgg 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 acagacaggagaggctgagctgaacacgggcgctttttatccactcctacctgaccacgg 740

                                                  
Query: 541 ctccttcctttcctctttcctgttgtagtaaacttccaa 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccttcctttcctctttcctgttgtagtaaacttccaa 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)