Query= MSMg01no543_h20.b1 MSMg01no543_h20.b1 CHROMAT_FILE:
MSMg01no543_h20.b1 PHD_FILE: MSMg01no543_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:53 2005
(659 letters)
>mm_chr5_88246045_88247103
Length = 1059
Score = 1154 bits (597), Expect = 0.0
Identities = 635/655 (96%), Gaps = 12/655 (1%)
Strand = Plus / Minus
Query: 5 gaattcattgtttctttagcagtgctttgaagagagaatactgttggaataattttgaca 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattcattgtttcattagcagtgctttgaagagagaatactgttggaataattttgaca 671
Query: 65 aaatataaaaatggcttttacaacagttagacatttttgtaaaagagaggtctcatttgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaatataaaaatggcttttacaacagttagacatttttgtaaaagagaggtctcatttgg 611
Query: 125 agtttttcatttttaacctttcaaggacaaatattttgacaattaagattttggaacaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 agtttttcatttttaacctttcaaggacaaatattttgacaattaagattttggaacaaa 551
Query: 185 agtctgttttatggggaacaatgaaatgcacaatgtcttatgtattttaaatatttgcct 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agtctgttttatggggagcaatgaaatgcacaatgtcttatgtattttaaatatttgcct 491
Query: 245 tccagtataatccttcagaggcaaaatacattgcactctcagttgagaaaactgtgttat 304
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 490 tccagtataatccttcagaggcaaaacacattgcactctcagttgataaaactgtgttat 431
Query: 305 tggagctttagttggaattaaattagaaaatgccaagcctgaccttagcctttgcccatg 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 430 tggagctttagttggaattaaattagaaaatgccaagcctgaccttagtctttgcccatg 371
Query: 365 gcaatgttctccagaccacaggatggatgaggtcagtaaaccctgcagattgccaatcta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gcaatgttctccagaccacaggatggatgaggtcagtaaaccctgcagattgccaatcta 311
Query: 425 atgagatatctgtctgctatgttactagaaaaaggttaatgagcaatgatgtaacttgtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atgagatatctgtctgctatgttactagaaaaaggttaatgagcaatgatgtaacttgtg 251
Query: 485 gtggcattacaaagtcaatgaaatgatatttagtacacacaaacagcatatacacataca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gtggcattacaaagtcaatgaaatgatatttagtacacacaaacagcatatacacataca 191
Query: 545 catacacatacacatacatatacatatatatcaagctgcatatatgtatttttacataca 604
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cataca------------tatacatatatatcaagctgcatatatgtatttttacataca 143
Query: 605 tgcttatgcatatatgtatgtaacaataataataaaagtaaaaactattaatgtg 659
||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 142 tgcatatgcatatatctatggaacaataataataaaagtaaaaactattaatgtg 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_h20.g1 MSMg01no543_h20.g1 CHROMAT_FILE:
MSMg01no543_h20.g1 PHD_FILE: MSMg01no543_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:53 2005
(543 letters)
>mm_chr5_88197357_88198295
Length = 939
Score = 787 bits (407), Expect = 0.0
Identities = 509/545 (93%), Gaps = 8/545 (1%)
Strand = Plus / Minus
Query: 1 aataaatactaaaaatataagatttctcacctgtcactgttcccttatgcatctggcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aataaatactaaaaatataagatttctcacctgtcactgttcccttatgcatctggcttt 680
Query: 61 ctagttcgctattgtgatttttttcatgagcatttagaattctcctacttctttccccct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 679 ctagttcgctattgtgatttttttcatgagcatttagaattctcctacttctcaccccct 620
Query: 121 tagacatcgtcctctttcactattcacctttctcctatgcctttgtcttcatctcctctg 180
|||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 619 cggacatcctcctttttcactattcacctttctcctatgccattgtcttcatctcctctg 560
Query: 181 cctccttctattctgacttccattgctgttctactatggacacattgactagtcatgatc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 559 cctccttctattctgacttccattgctgttctactgtggacacattgactagtcatgatc 500
Query: 241 ttactgctcaggg-gatctgacattgttctttcttcacaaattgttccttctcttctcag 299
||| ||||||||| | | |||| ||||| ||||| |||||||||||||||||||||
Sbjct: 499 ttattgctcagggagtt-tgac----ttcttccttcatgaattgttccttctcttctcag 445
Query: 300 gtatctgcaaagaggaatgcatttttctcctggagtgttggctcagatatcttcatcaca 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 444 gtatctgcaaagaggaatgcatttttctcctggagtgttggctcagatgtcttcatctca 385
Query: 360 ctgtggccatctacattagtgttgcattac-ctttgtcacacacaatacacattcatagg 418
|| |||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 384 ctttggccatctacattagtgttgcatgactctt-gtcacacacaatacacattcatagg 326
Query: 419 ttaaagaacatacaatgcaagagggtcttttacgtgattttctttcagtgattccaaatt 478
|||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||| ||
Sbjct: 325 ttaaagaacacacaatgtaagagggtcttttatatgattttttttcagtgattccaattt 266
Query: 479 gggaactggaaaagattaaattagtgctgacattaatttaaagtatacttgtgaaaacat 538
| |||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 265 gcaaactggaagagattaaattagttcttacattaatttaaagtatacttgtgaaaacat 206
Query: 539 aaatg 543
|||||
Sbjct: 205 aaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 939
Length adjustment: 10
Effective length of query: 533
Effective length of database: 929
Effective search space: 495157
Effective search space used: 495157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
