XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCAAAAGATTTTCTGCATTCAGAAAGGGGACAGAAAGTTGATT
CAGGAAGCAGTGTCTCTTACATTCAATATGACCTATTGATACCTCTGCTG
TGCACTACTTTCAAACTTTACACTTCATTTTGTTATTTCTGATTTGCTCA
GACACAACCAGACCTCAACCAATTTACATCCAAACACCAGGACTTCTATT
GCCTAGATATAACTATGATGCTCTCCCAAGTTTAATTGTTTTAAATTATC
CAAATATGATGCTTCTCATGGGCACATTTCTTCACATTTGTTTCCTTCTA
AGTCCCATTATAAGTTTTTCTTACAAAAGAGTTATTAAGGAGGAGCTTAA
ATGATAGAATAGGTCAGTCTTCTGATATGCACCATTTACAGTACATCGAA
AGTGAATCCTGTATGTTAGAGGTTGCTTATAAAGAAAATGACATTGGTAA
ACAGGATTTTAATCGATACCTTTTTTGGAGCCTGGTGGTATCAGCATTAA
GTACACAAATAAAAACAATAACTCATCATTATCCAGAATCTGTCATCAGT
AAAATATAGGTACCAATAACTAAGTTCCTTACCCAGGAATGATTGTTGAT
AAGGCCAATCTTGGGTTTTTGCATAATGCCGGTAAACACAGTCATTGTGA
GTTCATGATTGTAATGATTGTATTGGACACAGAGGAAAGCAGTTCATGTC
TTTCACAC

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACCTGCGTACAAGGCTT
GTTTACTAGTTAGGCACAGCGGAGGCCCGCGCCATCTTATAATGGCGATT
GCTCGCGGCACACACGGCTCTCCTCAGAGATTACTGGCGGCACACATGCG
ATTGCTCGCAGCACGTACCGGCTTTCCACACTTGTCAAAGATCAAGTGTG
CATAAGTGTGTGGGTTTATTTCTGGGTCTTTGATTCTATTCCATTGATGA
TATGGGATTTGGGCTAACCATTATGCTTATGCTTTTCAGGTCTTGCTCTG
GTGGGAGAAATTGGTTCTGATGGTGCCAAAGTATATTGGCTTTTATTTCT
TAGGATCTTGGGCTTGCCTCTCATCATCTGGTTATTTCTGGTATTAACTG
ACCTGGGTGTCTCTACCTGGGGCCTGCCTCCTGTGTCTCTAAAATTTTGT
TTGTTTTGGTTTGGTTTGGTTTGGTTTTGGTTTTTTGAGACAGGGTTTCT
CTGTGTAGCCCTGGCTGTCCTGAAACTCACTCTGTAGACCAGGCTGGCCT
GGAACTCAGAAATCTGCCTGCCTCTGCCTCCGAAATGCTGGGATTAAAGC
TGTGCACCACCACCGCCCTGCTGTGTCCCTAGGTTTTAGCAGATCTCCTG
GGAGACATGTGGCCCTGGCTGCAATAGATCTCGTAGGAGGCTTGCAGACT
GTTGGGTGTTGAAAG

Query= MSMg01no543_i23.b1 MSMg01no543_i23.b1 CHROMAT_FILE:
MSMg01no543_i23.b1 PHD_FILE: MSMg01no543_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:58 2005
         (665 letters)



>mm_chr5_79316335_79317399
          Length = 1065

 Score = 1257 bits (650), Expect = 0.0
 Identities = 659/662 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgcaaaagattttctgcattcagaaaggggacagaaagttgattcaggaagca 63
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcaaaagattttgtgcattcagaaaggggacagaaagttgattcaggaagca 263

                                                                       
Query: 64  gtgtctcttacattcaatatgacctattgatacctctgctgtgcactactttcaaacttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgtctcttacattcaatatgacctattgatacctctgctgtgcactactttcaaacttt 323

                                                                       
Query: 124 acacttcattttgttatttctgatttgctcagacacaaccagacctcaaccaatttacat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acacttcattttgttatttctgatttgctcagacacaaccagacctcaaccaatttacat 383

                                                                       
Query: 184 ccaaacaccaggacttctattgcctagatataactatgatgctctcccaagtttaattgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaaacaccaggacttctattgcctagatataactatgatgctctcccaagtttaattgt 443

                                                                       
Query: 244 tttaaattatccaaatatgatgcttctcatgggcacatttcttcacatttgtttccttct 303
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 tttaaattatccaaatatgatgcttctcatgggcacatttcctcacatttgtttccttct 503

                                                                       
Query: 304 aagtcccattataagtttttcttacaaaagagttattaaggaggagcttaaatgatagaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagtcccattataagtttttcttacaaaagagttattaaggaggagcttaaatgatagaa 563

                                                                       
Query: 364 taggtcagtcttctgatatgcaccatttacagtacatcgaaagtgaatcctgtatgttag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taggtcagtcttctgatatgcaccatttacagtacatcgaaagtgaatcctgtatgttag 623

                                                                       
Query: 424 aggttgcttataaagaaaatgacattggtaaacaggattttaatcgataccttttttgga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggttgcttataaagaaaatgacattggtaaacaggattttaatcgataccttttttgga 683

                                                                       
Query: 484 gcctggtggtatcagcattaagtacacaaataaaaacaataactcatcattatccagaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcctggtggtatcagcattaagtacacaaataaaaacaataactcatcattatccagaat 743

                                                                       
Query: 544 ctgtcatcagtaaaatataggtaccaataactaagttccttacccaggaatgattgttga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 744 ctgtcatcagtaaaatataggtaccaataactaagttccttacccaggaatgactgttga 803

                                                                       
Query: 604 taaggccaatcttgggtttttgcataatgccggtaaacacagtcattgtgagttcatgat 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 taaggccaatcttgggtttttgcataatgccggtaaacacagtcattgtgagttcatgat 863

             
Query: 664 tg 665
           ||
Sbjct: 864 tg 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)