Query= MSMg01no543_p08.b1 MSMg01no543_p08.b1 CHROMAT_FILE:
MSMg01no543_p08.b1 PHD_FILE: MSMg01no543_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:28 2005
(453 letters)
>mm_chr5_50189178_50190029
Length = 852
Score = 845 bits (437), Expect = 0.0
Identities = 446/449 (99%), Gaps = 1/449 (0%)
Strand = Plus / Minus
Query: 5 gaattcagctccatgatctgtaattttttgtagacaggccagatttgattttgccgtctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaattcagctccatgatctgtaattttttgtagacaggccagatttgattttgccgtctg 593
Query: 65 caaatctgaagtttataatgcatgtaatttgattttctttctctagaggtattttatcta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 caaatctgaagtttataatgcatgtaatttgattttctttctctagaggtattttatcta 533
Query: 125 tctgatataagtctttatcagcttaggcgtagtagaatttgccataaaagttaatattga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tctgatataagtctttatcagcttaggcgtagtagaatttgccataaaagttaatattga 473
Query: 185 atcctttgcttttaaagatactgttagaaatttgcaaattttaaaagacatttgttgggg 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 472 atcctttgcttttaaagatactgttagaaatttgctaattttaaaagacatttgttgggg 413
Query: 245 ggtattgaacgtatattgcctataaattctaagaatgtcccatattcttgactatacttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ggtattgaacgtatattgcctataaattctaagaatgtcccatattcttgactatacttt 353
Query: 305 ttattatactaatttgtcctgatttctctgtgtgttcatttgcatgtgattgaatgtatg 364
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 352 ttattatactaatttgtcctgatttctctgtgtgttcatttgcatgtgagtgaatgtatg 293
Query: 365 taagtgtagagatcagacagaggtcaactttgggtgtcaatgcccaggagtcatctgccc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taagtgtagagatcagacagaggtcaactttgggtgtcaatgcccaggagtcatctgccc 233
Query: 425 cccccccttaaatgttattttttctttta 453
|||||| ||||||||||||||||||||||
Sbjct: 232 cccccc-ttaaatgttattttttctttta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 852
Length adjustment: 10
Effective length of query: 443
Effective length of database: 842
Effective search space: 373006
Effective search space used: 373006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_p08.g1 MSMg01no543_p08.g1 CHROMAT_FILE:
MSMg01no543_p08.g1 PHD_FILE: MSMg01no543_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:29 2005
(563 letters)
>mm_chr5_50098575_50099535
Length = 961
Score = 1069 bits (553), Expect = 0.0
Identities = 560/563 (99%), Gaps = 2/563 (0%)
Strand = Plus / Plus
Query: 1 ccttgtgttttacttaatgggttacctaggtaactctttcagctttgaatggtccttaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttgtgttttacttaatgggttacctaggtaactctttcagctttgaatggtccttaaa 260
Query: 61 acgtgcattttcacctgggaagagaaaaggattacagacatttggagagttcaaaaaaaa 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgcattttcacctgggaagagaaaaggattacagacatttggagagttcaaaaaaaa 320
Query: 121 aaagatgccttaatacctcaggctaaaagaatctataatgattgcttggtttggagatta 180
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 a--gatgccttaatacctcaggctaaaagaatctataatgattgcttggtttggagatta 378
Query: 181 acatagttctattttgtgattgaatattgaatgcatttattgagcagctaaggctatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acatagttctattttgtgattgaatattgaatgcatttattgagcagctaaggctatttt 438
Query: 241 aatgttcaaggtaatataccagctcttgaaatgagtggtccacagcatacttacattgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgttcaaggtaatataccagctcttgaaatgagtggtccacagcatacttacattgct 498
Query: 301 cataacattttgtgatctataactctgtgtattatatatcctatatgtgtttaagtgtac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cataacattttgtgatctataactctgtgtattatatatcctatatgtgtttaagtgtac 558
Query: 361 atatatagactctgtcagcaggttggctagctgcaggtcttcacccctttttcctctcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atatatagactctgtcagcaggttggctagctgcaggtcttcacccctttttcctctcct 618
Query: 421 ccaaatcttccagtttaatcaccagctctgtagcagactacatgattcaacttcccctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccaaatcttccagtttaatcaccagctctgtagcagactacatgattcaacttcccctcc 678
Query: 481 ccctacttgctcatctctaggggctcacacaggtcttctcctccaaacttcctcctcccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccctacttgctcatctctaggggctcacacaggtcttctcctccaaacttcctcctcccc 738
Query: 541 actcattgcttttttccagtgcc 563
|||||||||||||||||||||||
Sbjct: 739 actcattgcttttttccagtgcc 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 961
Length adjustment: 10
Effective length of query: 553
Effective length of database: 951
Effective search space: 525903
Effective search space used: 525903
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
