Query= MSMg01no544_e22.b1 MSMg01no544_e22.b1 CHROMAT_FILE:
MSMg01no544_e22.b1 PHD_FILE: MSMg01no544_e22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:55 2005
(617 letters)
>mm_chr5_106952200_106953218
Length = 1019
Score = 783 bits (405), Expect = 0.0
Identities = 430/439 (97%), Gaps = 2/439 (0%)
Strand = Plus / Minus
Query: 181 cctcttcctcctcctcctcttcctcttcctcctcttcctcccattaaaagaattgttgga 240
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 860 cctcttcctcctcctcctcttcctcctcctcctcttcctctcattaaaagaattgttgga 801
Query: 241 ataagaatttctggaag--aaaaaaaatccaggattttgcctctcagacttcaatctaga 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ataagaatttctggaagaaaaaaaaaatccaggattttgcctctcagacttcaatctagg 741
Query: 299 tctgatttttttcagacattgtccgaaggtaccattattgattaggaagtgaccctggga 358
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctgatttttttcagacattttccgaaggtaccattattgattaggaagtgaccctggga 681
Query: 359 gcaagtcactcctcacagtggaaacagtaggagcccagcacaatgctgatcagatgaatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcaagtcactcctcacagtggaaacagtaggagcccagcacaatgctgatcagatgaatg 621
Query: 419 tctgtgttcaacccttacgggcccagtgccgtcataagattctcttcccctaatagtttt 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 tctgtgttcaacccttacgggcccagtgccgtcataagattctgttcccctaatagtttt 561
Query: 479 ccagggttgtgctgaaagggttctgtcaatcaaatctgaaaatctgcttaacatcctaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccagggttgtgctgaaagggttctgtcaatcaaatctgaaaatctgcttaacatcctaac 501
Query: 539 tggggttaacccagtgcagctactcaggagttattgttcctggttttgacatcatcaacg 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggggttaacccagtgcagctactcaggagttattgttcctggttttgacatcatcaaca 441
Query: 599 agcctcgatggcaaatgcg 617
||||| |||||||||||||
Sbjct: 440 agccttgatggcaaatgcg 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1019
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1009
Effective search space: 612463
Effective search space used: 612463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_e22.g1 MSMg01no544_e22.g1 CHROMAT_FILE:
MSMg01no544_e22.g1 PHD_FILE: MSMg01no544_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:55 2005
(586 letters)
>mm_chr5_106806906_106807891
Length = 986
Score = 1102 bits (570), Expect = 0.0
Identities = 582/586 (99%)
Strand = Plus / Plus
Query: 1 aaattaaagtcacattgaaactgtgccagtcccatgagccacacctcattctggacatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaattaaagtcacattgaaactgtgccagtcccatgagccacacctcattctggacatgg 260
Query: 61 caagagtttgaagccaagaacaaatttgttaaccccataaaccatcagtcacatgacacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagagtttgaagccaagaacaaatttgttaaccccataaaccatcagtcacatgacacg 320
Query: 121 cagtgcaacgaactggaatgtgtcatgtgcccatctatgattgataaacccattcctgag 180
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cagtgcaatgaactggaatgtgtcatgtgcccatctatgatcgataaacccattcctgag 380
Query: 181 gtttttcagggcgtggggtgtttgtctgtggttctgtggttgagcctcaggacttattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttttcagggcgtggggtgtttgtctgtggttctgtggttgagcctcaggacttattct 440
Query: 241 gcaaggccagcacttggccgcagagccacattacttcttattggcagatgactttcctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaggccagcacttggccgcagagccacattacttcttattggcagatgactttcctga 500
Query: 301 gttgcccaggctggccttgactctgcagcatttatagaccttaggatcttccagcctcag 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgcccaggctggccttgactctgcagcatttatagaccttaggatcttccagcctcag 560
Query: 361 tctccctagctgctgtaattataagcctgcagcatacatcgctataatttccatttcaca 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctccctagctgctataattataagcctgcagcatacatcgctataatttccatttcaca 620
Query: 421 ataaagaagcttttgcatgtgggagaggtttacattataacagtcattttaaataaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaagaagcttttgcatgtgggagaggtttacattataacagtcattttaaataaattt 680
Query: 481 gtgaggttttatttagactgggtctcatgtacattgacctcaaactaactatataaccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgaggttttatttagactgggtctcatgtacattgacctcaaactaactatataaccaa 740
Query: 541 ggctagccttgaactatcttcttgctaccacctcccaagggctggg 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggctagccttgaactatcttcttgctaccacctcccaagggctggg 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
