Query= MSMg01no544_h13.b1 MSMg01no544_h13.b1 CHROMAT_FILE:
MSMg01no544_h13.b1 PHD_FILE: MSMg01no544_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:08 2005
(636 letters)
>mm_chr5_143863697_143864730
Length = 1034
Score = 1133 bits (586), Expect = 0.0
Identities = 599/604 (99%), Gaps = 2/604 (0%)
Strand = Plus / Minus
Query: 33 aaggtaaagatgttctattttaggtcaatgggaacttctccagccttgttttctaggtct 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 aaggtaaagatgttctattttaggtcaatgggaacttctccagccttgttttctaggtct 975
Query: 93 gacaggacccagacttaacaaatagtctgtggtagctgctttaatgtctgagtgacaaga 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gacaggacccagacttaacaaatagtctgtggtagctgctttaatgtctgagtgacaaga 915
Query: 153 tgctccaggcccattctgtgtatctaactcctaccacagcctggtgttggtaattttcca 212
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 914 tgctccaggcccattctgtgtatctaactcctgccacagcctggtgttggtaattttcca 855
Query: 213 aaattacttttggtgagaaaatttcaaagattggagaaaaccctgttttgtgtttttttt 272
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 854 aaattacttttggtgagaaaatttcaaagattggagaaaaccctgttttgtg--tttttt 797
Query: 273 ttctttattgccctcaattatttatttattattatgttgttattttatgtaagaaggttt 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ttctttattgccctcaattatttatttattattatgttgttattttatgtaagaaggttt 737
Query: 333 aaaacttggtctatacatgctcagttatggctggagtaaaaaatctgtaatgttagtaat 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaaacttggtctatacatgctcagttatggctggagtaaaaaatctgtaatgttagtaat 677
Query: 393 aaagcaagtgtcagggtttattgtgagcatgatcgactaatgcaaaggcagtggttagaa 452
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 676 aaagcaagtgtcagggtttattgtgagcatgattgactaatgcaaaggcagtggttagaa 617
Query: 453 atgccttacacagagccctcactttagtttgtcatagttaccttctcacacaaggttagg 512
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 616 atgccttacacagagccctcactttagtttgtcatagttaccgtctcacacaaggttagg 557
Query: 513 gatcataatccagctatctgaataccacactccctcagtacaccacccttatacttgtgt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gatcataatccagctatctgaataccacactccctcagtacaccacccttatacttgtgt 497
Query: 573 aagatttgaacttcgattttaggaaaagattttaagttggagtgatcattggctacccca 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagatttgaacttcgattttaggaaaagattttaagttggagtgatcattggctacccca 437
Query: 633 aatt 636
||||
Sbjct: 436 aatt 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1034
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1024
Effective search space: 641024
Effective search space used: 641024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_h13.g1 MSMg01no544_h13.g1 CHROMAT_FILE:
MSMg01no544_h13.g1 PHD_FILE: MSMg01no544_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:09 2005
(522 letters)
>mm_chr5_143714923_143715844
Length = 922
Score = 948 bits (490), Expect = 0.0
Identities = 499/502 (99%)
Strand = Plus / Plus
Query: 2 tgagccacagatacagctttccaaacccatgttttgtaagagccaccaggcctgaaaact 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tgagccacagatacagctttccaaacccatgttttgtaagagccaccaggcctgaaaact 261
Query: 62 ctgggccatgtcccgtttgttgtgtctaggtctcagtttcctggaaggcagagaatgcgt 121
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 262 ctgggccatgtcccgtttgttgtgtctaggcctcagtttcctggaaggcagagaatgcgt 321
Query: 122 aggtccgttgttagtggagacagcagtggtggtaacagcctggtctaccctcttggtcag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggtccgttgttagtggagacagcagtggtggtaacagcctggtctaccctcttggtcag 381
Query: 182 agggaggcaggcggagagtaactcagggcctgggggcaacacccagctgggcctggggct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agggaggcaggcggagagtaactcagggcctgggggcaacacccagctgggcctggggct 441
Query: 242 agtgggggctcagccaggcaggacgtgggtcctcctacttcctaagctctgatgggcaag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agtgggggctcagccaggcaggacgtgggtcctcctacttcctaagctctgatgggcaag 501
Query: 302 tggtgccagtggtaccaggctgccctgaggggccctcagagcaggtgaccacagagccac 361
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 502 tggtgccagtggtaccaggctgccctgaggggcccttagagcaggtgaccacagagccac 561
Query: 362 aaagaggctattcatggcctctggttcacgaggctgcccctttattgagggcttgaacca 421
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaagaggctattcatggcctccggttcacgaggctgcccctttattgagggcttgaacca 621
Query: 422 cagaaagctgtgtggtctgcagggaagctagttctgagctgtctggccagctacagtagt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagaaagctgtgtggtctgcagggaagctagttctgagctgtctggccagctacagtagt 681
Query: 482 gtgtgtgtgtgtgtgtgtgtgt 503
||||||||||||||||||||||
Sbjct: 682 gtgtgtgtgtgtgtgtgtgtgt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
