BAC Information

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BAC

Clone NameMSMg01-544O12
Chromosome5 (Build37)
Map Location 72,614,277 - 72,614,709
singlet/doubletsinglet
Overlap geneAtp10d
Upstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8
Downstream geneCorin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544O12.T7 (MSMg01no544_o12.b1)MSMg01-544O12.TJ (MSMg01no544_o12.g1)
ACCAG610095AG610096
length748755
length of high quality
(start - end)
453 (48 - 500)489 (82 - 570)
definitionCHROMAT_FILE: MSMg01no544_o12.b1 PHD_FILE: MSMg01no544_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:44 2005CHROMAT_FILE: MSMg01no544_o12.g1 PHD_FILE: MSMg01no544_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATGGGCTCAAGAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCATCATTCCTCCTGTGGGTTGGTTTTGTTTTGTTTTTTTTT
TTAATTTATTTCATGTGGTTGCTGAGACTTGAACTCAGGACCTTCAGAAG
AGCAGTTGGGTGCTCTTACTCTGCTGAGCCATCTCACCAGCCCCCTATGG
GTTGTTTTGACAGGTCTTTTGGCCACAGTGATGTAAAAGTAACTGATATG
GACAGAGTGACCAGGAATCTATCAAGTTTCTTCTGGTTCAGTGCCAACTC
TGAGATGCAACCTGACATAGATGCACACGTTGCTGCAAGCAAAGGCTCTA
CAAACACTCCATGCCCTTGCTCCTAGCTCCACAGATGGACTGTTCCTGTC
CTTTCTCCCTCTTTCATCATTATAGTGTTGGTTTCAACATTCAACAATGT
GTTGAAATACATACTCTGGCAGTCACTAGCTCCACACTGAACTGAAAGTA
TCTGTGGGAGTGGAGAGAGCCACATTCCTAGTCTGATGGATGCACACACT
GGACTCTTAGATGCTAAAGATGCCAGCAGGGCCAAAGGGCACAGGCGTAT
CCAGCAATTTTCCCACCATAGCCAAAACAGAGCCTTTTGAACTTTCAGCC
AAGTAAAGAAACATTCCTTGCTCCAAAAAAAAGTTCTCATAATGGTAATT
GTTAAGTATAAACATTCATGGAACGTTTTCCATTAATTGATTGCCTAN
AGAGACAGATATAGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAACTCCTTAGGGCTA
GCGAGAAAGAGAATGAAACAGAGAAAATTCACACATGTACACAAACACAC
ACACACACACACACACACACACACACACACACACACATACTGAATGGACA
AAACAAAAGGCAGAGTCCAAAAACTTCATACACACAAATATACATGTATA
TACACATAAACACATACACATATTCATACAAACCTACAGACAGACATACA
CATTCACACATAGAATGGTTAGAGCAAAGCTCCAGCAAGCAGAGTCCAAG
TACTCCACACAAACATCCATAAAAACACACAACTGGTGGGTGGAAGGAGC
AATGTTCTAACCCCCATTCCCTCAGACGTTATACATGCACACTTAGTTAC
TGGGAGAAAGAGACAATGTTCTGGCCACACCACACCACTCCTTACATTAT
TTTTTTTCTTCCATTCCTTAAATATCCCAGCAAAATCTTTCTTTTTTTTT
CTTTTTTTTTCCATTTTTATTAGGTATTTAGCTCATTTACATTTTCCATG
CTATACCAAAAGTCTCCCATACCCATCCACCCCCAACTCCCCTAAACATA
TAAGTTCACATTTTTTGTGTCCTGGTGGTCCCCCTGTAACAGCCGTATTA
AAAATTTTGCTGGTTCCAATTGTAACTCTAATTTTCCAGTGTATGATCAA
ATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_o12.b1 MSMg01no544_o12.b1 CHROMAT_FILE:
MSMg01no544_o12.b1 PHD_FILE: MSMg01no544_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:44 2005
         (453 letters)



>mm_chr5_72613930_72614783
          Length = 854

 Score =  725 bits (375), Expect = 0.0
 Identities = 423/445 (95%), Gaps = 14/445 (3%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcatcattcctcctgtgggttggttttgttttgtttttttttttaatttatttcat 67
           ||||||||||||||||||||||||        ||||||||||||||||||   |||||||
Sbjct: 780 gaattcatcattcctcctgtgggt--------ttttgtttttttttttaa---atttcat 732

                                                                       
Query: 68  gtggttgctgagacttgaactcaggaccttcagaagagcagttgggtgctcttactctgc 127
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 731 gtggttgctgggacttgaactcaggaccttcagaagagcagtcgggtgctcttactccgc 672

                                                                       
Query: 128 tgagccatctcaccagccccctatgggttg-ttttgacaggtcttttggccacagtgatg 186
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 671 tgagccatctcaccagctccctatgggttgtttttgacaggtcttttggccacagtgatg 612

                                                                       
Query: 187 taaaagtaactgatatggacagagtgaccaggaatctatcaagtttcttctggttcagtg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 611 taaaagtaactgatatggacagagtgaccaggaatctatcaagtttcttctggttcaatg 552

                                                                       
Query: 247 ccaactctgaga-tgcaacctgacatagatgcacacgttgctgcaagcaaaggctctaca 305
           |||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 551 ccaactctgagact-caacctgacatagatgcacacgttgctgcaaacaaaggctctaca 493

                                                                       
Query: 306 aacactccatgcccttgctcctagctccacagatggactgttcctgtcctttctccctct 365
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 492 aacactccatgcccttgctcctagctccacagatggaccgttcctgttctttctccctct 433

                                                                       
Query: 366 ttcatcattatagtgttggtttcaacattcaacaatgtgttgaaatacatactctggcag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttcatcattatagtgttggtttcaacattcaacaatgtgttgaaatacatactctggcag 373

                                    
Query: 426 tcactagctccacactgaactgaaa 450
           |||||||||||||||||||||||||
Sbjct: 372 tcactagctccacactgaactgaaa 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 854
Length adjustment: 10
Effective length of query: 443
Effective length of database: 844
Effective search space:   373892
Effective search space used:   373892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)